Pairwise Alignments

Query, 340 a.a., 16S rRNA methyltransferase from Vibrio cholerae E7946 ATCC 55056

Subject, 332 a.a., 16S rRNA methyltransferase from Pseudomonas simiae WCS417

 Score =  202 bits (513), Expect = 1e-56
 Identities = 124/334 (37%), Positives = 178/334 (53%), Gaps = 8/334 (2%)

Query: 8   SEIALRQLDYFADKHVLVAGEVEDRFPIELRQYCASVSVFTTHYGYYSQLKAYPEITRYF 67
           SE+ LRQ + F    +LV    +D     L     +   ++ H G  + L A      +F
Sbjct: 5   SEVLLRQAELFQGNLLLVGLPADD-----LLGRLPNAHGWSWHAGDQAALDARFAERSHF 59

Query: 68  GEQLTADLNADLILLYWPKAKQEAEYLLAMLLAKLGTGTEIVVVGENRSGVKSIEKMFAA 127
           G  +  +   D  +++ PK+K   +YLL  + A+L    E+ +VGE ++G++S  K    
Sbjct: 60  GVNVP-ERAFDAAVIFLPKSKDLTDYLLNAVAARL-PAAELFLVGEKKAGIESAAKQMIP 117

Query: 128 YGPIHKYDSARRCSFYWGHCVHTPAAFDIEQWFKSYAVDYQGHELTIRSLPGVFSHGEFD 187
           +G   K D+AR C  +     + P A ++E   + + V      L + SLPGVFSHG  D
Sbjct: 118 FGKPRKLDNARHCQLWQVTVANAPQAVELESLAQVFEVPLAEGPLKVLSLPGVFSHGRLD 177

Query: 188 LGSRLLLDTLPPL-SGKVIDIGSGAGVLGCVMAKLNPHIELEMTDISALAIRSSQETLVA 246
            G+ LLL+ L  L SG ++D G GAGVLG  + +  PH  + M D+ A A  SS+ TL A
Sbjct: 178 RGTELLLEHLDKLPSGHLLDFGCGAGVLGAAVKRRYPHNTVTMLDVDAFAAASSRLTLAA 237

Query: 247 NQLHGHVYPSDMFSDTGHHYNYIVTNPPFHSGLETSYSATERLLAESVDHLASGGSIWVV 306
           N L   V   D         N I++NPPFH G+ T Y ATE LL ++  HLA GG + +V
Sbjct: 238 NGLEAEVLTGDGIDAAPMGLNAILSNPPFHVGVHTDYFATENLLRKAAKHLAKGGELRLV 297

Query: 307 ANSFLKYPPILEQAFGHCDIAAKTNKFAIYHAKK 340
           ANSFLKY P++E+  G C I A+ N F IY AK+
Sbjct: 298 ANSFLKYQPLIEEHLGVCAIKAEGNGFRIYRAKR 331