Pairwise Alignments

Query, 340 a.a., 16S rRNA methyltransferase from Vibrio cholerae E7946 ATCC 55056

Subject, 342 a.a., Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  262 bits (670), Expect = 8e-75
 Identities = 140/345 (40%), Positives = 206/345 (59%), Gaps = 22/345 (6%)

Query: 1   MQPYTAPSEIALRQLDYFADKHVLVAGEVEDRFPIELRQYCASVSVFTTHYGYYSQLKAY 60
           M  +T  SE+ LR  D F    +L AG+++D  P      CA+    T  + ++  L   
Sbjct: 1   MSAFTPASEVLLRHSDDFEQSRILFAGDLQDDLPARFE--CAASRAHTQQFHHWQVL--- 55

Query: 61  PEITRYFGEQLTADLNA--------DLILLYWPKAKQEAEYLLAMLLAKLGTGTEIVVVG 112
              +R  G+ +   L A        D ++ YWPK K EA++ L  +L+ + +G ++ VVG
Sbjct: 56  ---SRQMGDNVRFSLVAQASDVADCDTLIYYWPKNKPEAQFQLMNILSLMPSGVDVFVVG 112

Query: 113 ENRSGVKSIEKMFAAYGPIHKYDSARRCSFYWGHCVHTPAAFDIEQWFKSYAVDYQGHEL 172
           ENRSGV+S E M A Y P++K DSARRC  Y G     P  F +E W+  Y +D     L
Sbjct: 113 ENRSGVRSAEPMLADYAPLNKVDSARRCGLYHGRLEKQPQ-FSLESWWAEYNID----GL 167

Query: 173 TIRSLPGVFSHGEFDLGSRLLLDTLPP-LSGKVIDIGSGAGVLGCVMAKLNPHIELEMTD 231
           TI++LPGVFS    D+GS+LLL TL P   GKV+D+G GAGVL   +A  +P + L + D
Sbjct: 168 TIKTLPGVFSRDGLDVGSQLLLSTLTPHTKGKVLDVGCGAGVLSAALASHSPKVRLTLCD 227

Query: 232 ISALAIRSSQETLVANQLHGHVYPSDMFSDTGHHYNYIVTNPPFHSGLETSYSATERLLA 291
           +SA A+ +S+ TL AN L G V+ S++FS+    ++ I++NPPFH G++TS  A + L+ 
Sbjct: 228 VSAPAVEASRATLAANGLEGEVFASNVFSEVKGRFDMIISNPPFHDGMQTSLDAAQTLIR 287

Query: 292 ESVDHLASGGSIWVVANSFLKYPPILEQAFGHCDIAAKTNKFAIY 336
            +V HL SGG + +VAN+FL YP IL++ FG  ++ A+T +F +Y
Sbjct: 288 GAVRHLNSGGELRIVANAFLPYPKILDETFGFHEVIAQTGRFKVY 332