Pairwise Alignments

Query, 340 a.a., 16S rRNA methyltransferase from Vibrio cholerae E7946 ATCC 55056

Subject, 343 a.a., 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC from Escherichia coli ECRC62

 Score =  264 bits (675), Expect = 2e-75
 Identities = 142/341 (41%), Positives = 208/341 (60%), Gaps = 10/341 (2%)

Query: 1   MQPYTAPSEIALRQLDYFADKHVLVAGEVEDRFPIELRQYCASVSVFTTHYGYYSQLKAY 60
           M  +T  SE+ LR  D F    +L AG+++D  P  L    A+    T  + ++  L   
Sbjct: 1   MSAFTPASEVLLRHSDDFEQSRILFAGDLQDDLPARLDT--AASRAHTQQFHHWQVLSRQ 58

Query: 61  PEITRYFGEQLTAD--LNADLILLYWPKAKQEAEYLLAMLLAKLGTGTEIVVVGENRSGV 118
                 F    TAD   + D ++ YWPK K EA++ L  LL+ L  GT+I VVGENRSGV
Sbjct: 59  MGDNARFSLVATADDVADCDTLIYYWPKNKPEAQFQLMNLLSLLPVGTDIFVVGENRSGV 118

Query: 119 KSIEKMFAAYGPIHKYDSARRCSFYWGHCVHTPAAFDIEQWFKSYAVDYQGHELTIRSLP 178
           +S E+M A Y P++K DSARRC  Y+G     P  FD ++++  Y+VD     LT+++LP
Sbjct: 119 RSAEQMLADYAPLNKVDSARRCGLYFGRLEKQPV-FDADKFWGEYSVD----GLTVKTLP 173

Query: 179 GVFSHGEFDLGSRLLLDTLPP-LSGKVIDIGSGAGVLGCVMAKLNPHIELEMTDISALAI 237
           GVFS    D+GS+LLL TL P   GKV+D+G GAGVL    A+ +P I L + D+SA A+
Sbjct: 174 GVFSRDGLDVGSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAV 233

Query: 238 RSSQETLVANQLHGHVYPSDMFSDTGHHYNYIVTNPPFHSGLETSYSATERLLAESVDHL 297
            +S+ TL  N + G V+ S++FS+    ++ I++NPPFH G++TS  A + L+  +V HL
Sbjct: 234 EASRATLAGNCVEGEVFASNVFSEVKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHL 293

Query: 298 ASGGSIWVVANSFLKYPPILEQAFGHCDIAAKTNKFAIYHA 338
            SGG + +VAN+FL YP +L++ FG  ++ A+T +F +Y A
Sbjct: 294 NSGGELRIVANAFLPYPDVLDETFGFHEVIAQTGRFKVYRA 334