Pairwise Alignments

Query, 340 a.a., 16S rRNA methyltransferase from Vibrio cholerae E7946 ATCC 55056

Subject, 360 a.a., Ribosomal RNA small subunit methyltransferase C from Alteromonas macleodii MIT1002

 Score =  186 bits (472), Expect = 8e-52
 Identities = 98/260 (37%), Positives = 149/260 (57%), Gaps = 1/260 (0%)

Query: 80  ILLYWPKAKQEAEYLLAMLLAKLGTGTEIVVVGENRSGVKSIEKMFAAYGPIHKYDSARR 139
           ++++ PKAK   + LL M  + +G    I VVGEN+ G+KS  K+   YGP  K DSAR 
Sbjct: 99  VMIFLPKAKTHFQMLLRMAASMVGQNGRIHVVGENKGGIKSAAKLMDQYGPTQKVDSARH 158

Query: 140 CSFYWGHCVHTPAAFDIEQWFKSYAVDYQGHELTIRSLPGVFSHGEFDLGSRLLLDTLPP 199
           CS            F+ + W        +G    + S+PGVFS+ E D G+ LLL+ L  
Sbjct: 159 CSLITVLVEEPHLVFEPDAWLDMNTYHVEGTAWQVASMPGVFSYKELDAGTELLLEKLST 218

Query: 200 -LSGKVIDIGSGAGVLGCVMAKLNPHIELEMTDISALAIRSSQETLVANQLHGHVYPSDM 258
            LSG+++D   GAGV+   +    PH++L +TD+SALA+  S  TL  N L   +Y +D 
Sbjct: 219 SLSGEILDFACGAGVIASYIMLKYPHLKLHLTDVSALAVYCSALTLADNGLSATLYAADG 278

Query: 259 FSDTGHHYNYIVTNPPFHSGLETSYSATERLLAESVDHLASGGSIWVVANSFLKYPPILE 318
                    +IVTNPPFH+G++T Y+ T+R ++++   L+ GG++ +VAN FL YP +L 
Sbjct: 279 LHGFTQKVQHIVTNPPFHTGIKTDYTITKRFISDAKASLSRGGTMQMVANRFLPYPGLLA 338

Query: 319 QAFGHCDIAAKTNKFAIYHA 338
           + F      A+T++F++Y A
Sbjct: 339 EHFQTVYTTAQTSQFSVYQA 358