Pairwise Alignments

Query, 340 a.a., 16S rRNA methyltransferase from Vibrio cholerae E7946 ATCC 55056

Subject, 338 a.a., ribosomal RNA small subunit methyltransferase from Agrobacterium fabrum C58

 Score = 82.0 bits (201), Expect = 2e-20
 Identities = 71/269 (26%), Positives = 118/269 (43%), Gaps = 11/269 (4%)

Query: 78  DLILLYWPKAKQEAEYLLAMLLAKLGTGTEIVVVGENRSGVKSIEKMFAAYGPIHKYDSA 137
           D  LL   K + E E  +A  L+++  G  IV  G    G+ ++ K  +  G I    + 
Sbjct: 75  DAALLLCGKHRGENENRVAEALSRVKAGGLIVAAGSKEDGIVTLRKTLSKLG-IESESTP 133

Query: 138 RRCSFYWGHCVHTPAAFDIEQWFKSYAVDYQGHELTIRSLPGVFSHGEFDLGSRLLLDTL 197
           +    Y G  +      D+       A      E    +LPG+FSH   D GS LL   L
Sbjct: 134 K----YHGVAIWFKRPEDVSAAVLKLAQKPATVEGRFTALPGMFSHDRVDDGSELLASRL 189

Query: 198 PP-LSGKVIDIGSGAGVLGCVMAKLNPHI-ELEMTDISALAIRSSQETLVAN--QLHGHV 253
           P    G   D G+G G L  ++A+ +P    +++ +    A+  ++  L+ N  +L    
Sbjct: 190 PTDFDGNAADFGAGWGYLSIMLAEKSPRTARIDLFEADWNALEFAKTNLLENNPRLTARF 249

Query: 254 YPSDMFSDTGHH-YNYIVTNPPFHSGLETSYSAT-ERLLAESVDHLASGGSIWVVANSFL 311
           +  D+ ++     Y+ I+ NPPFH+  + +  A  +  +  +   L SGG + +VAN  L
Sbjct: 250 FWQDLANEPPKEKYDLIIMNPPFHAAGQAAEPALGQAFIKAAAGALRSGGKLLMVANRGL 309

Query: 312 KYPPILEQAFGHCDIAAKTNKFAIYHAKK 340
            Y P+L   F       +  +F I  A+K
Sbjct: 310 PYEPVLAAEFRTTAEVCRNARFKILSAQK 338