Pairwise Alignments

Query, 1129 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1207 a.a., Sensor histidine kinase RcsC from Xanthobacter sp. DMC5

 Score =  200 bits (509), Expect = 5e-55
 Identities = 155/520 (29%), Positives = 261/520 (50%), Gaps = 49/520 (9%)

Query: 406 ERKDEIGRLAVSFERMQRSIREKIS---LIKSQNKELESNLLIIRKQNDELQLANKLKDE 462
           E + +   L  S + ++RS +E  +   L+++ N+++E+          EL  AN+ K +
Sbjct: 490 ELRVQADELQASNDVLRRSSQEMTAQKELLEALNQQMEARA-------GELLRANEYKSQ 542

Query: 463 FLATTSHELRTPLHGMIGIAEALISGANGPISAAHKYQLDIIISSGQRLATLVDDLLDYH 522
           FLA  SHELRTPL+ ++ +++ L     G + A       II SSG  L  L++D+LD  
Sbjct: 543 FLANMSHELRTPLNSLLILSQDLAENRTGNLDADQVEAASIIHSSGSNLLRLINDILDLS 602

Query: 523 KMRYGALDIQRCAVDLSSATRLVLELSHHLLGKKTLRIINQVSEQPVWVSADPQRLEQVL 582
           K+  G +++    V ++S  + +      L  ++ LR+   V++ P  V  DP +L+Q+L
Sbjct: 603 KVEAGKMEVVYEPVKVASVAQRLERNFRRLAQERKLRLAVSVTDAPELVFTDPGKLDQIL 662

Query: 583 YNLIGNAIKYTSEGKIVISATYIDDK----VRVQVVDTGQGIPAEQLEHIFEPLIQAGHD 638
            NL+GNA+K+T +G+  +S T+  D+    ++V V D+G GIP ++L  IFE   Q    
Sbjct: 663 TNLVGNALKFTMQGR--VSVTFSKDEAGKTLKVAVADSGIGIPEDKLGAIFEAFEQVDAS 720

Query: 639 ASRYRQGAGLGLSISRQLIELMHGTLYVSSQPMVGTTFSFTL----PLASEEEIAQARLT 694
             R   G GLGL+I+++L  L+ G++ V S    G+TF+  +    PL  E+  A     
Sbjct: 721 TRRQFGGTGLGLAITQRLARLLGGSVTVESALGQGSTFTLEIPVGEPLPEEDGEAAPAPA 780

Query: 695 ELPHFQAPEVL------DSELPEQSNLP-------ENEHGPL------LLVADDEPVNLR 735
             P   A +V         E    S LP       E++   L      +LV +D+PV  R
Sbjct: 781 PQPAMDARQVAFDTSRQAGEAAGLSGLPPVPAVNVEDDRDRLTPGATVILVVEDDPVFAR 840

Query: 736 VLDSFLRLEGYRVHTAQDGHQVLEAIKREKPELVLLDIMMPGMSGYQVCEKLRQTYDHAE 795
            L   +R +GY    A DG   L   +  KP  +LLD+M+PG+ G+ V E+L+       
Sbjct: 841 TLVGLVRRKGYLALAAGDGESGLALARTYKPTGILLDVMLPGLDGWTVIERLKADAATRH 900

Query: 796 LPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQEL--AARIVAHLTASKAELRRIENAQ 853
           +P+  ++AL++S    RG + GA  +L+KP +  +L  A  ++ H +A +   RR+    
Sbjct: 901 IPVHFVSALDESR---RGRDLGAVGFLTKPVSADQLSEALGLLTHYSADRP--RRVLVVD 955

Query: 854 LQKELKHRAMVEASLLETQGRLLEQLESAPEAILCVKEGN 893
                +H      +LL  +   + +  SA  A+  V +G+
Sbjct: 956 DDAAARHAV---RTLLAREKAQIVEAASAEAALEVVAQGD 992



 Score = 85.1 bits (209), Expect = 3e-20
 Identities = 53/135 (39%), Positives = 75/135 (55%), Gaps = 3/135 (2%)

Query: 710  PEQ--SNLPENEHGPLLLVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREKP- 766
            PEQ  +N   +  G  LL+ DD+  N+  L   LR  G  V  AQDG + L  +  +   
Sbjct: 1072 PEQLAANPDGDLEGRKLLLVDDDMRNIYALAKVLRARGVNVVLAQDGAKALAQLDEQPDI 1131

Query: 767  ELVLLDIMMPGMSGYQVCEKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPF 826
            E+VL+D+MMP M GY+   ++R     A+LP+I LTA    DDR +   AGA+DYL+KP 
Sbjct: 1132 EIVLMDVMMPVMDGYEAMTQIRAQPRFAKLPVIALTAKAMKDDREKCLAAGASDYLAKPV 1191

Query: 827  NKQELAARIVAHLTA 841
            +  +L + I   L A
Sbjct: 1192 DVPKLLSMIRTWLAA 1206



 Score = 39.7 bits (91), Expect = 1e-06
 Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 724  LLVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREKPELVLLDIMMPGMSGYQV 783
            +LV DD+      + + L  E  ++  A      LE + +   + ++LD+ +PGMSG+++
Sbjct: 951  VLVVDDDAAARHAVRTLLAREKAQIVEAASAEAALEVVAQGDLDCIVLDLGLPGMSGFEL 1010

Query: 784  CEKLRQTYDHAELPIIM 800
             E+L     H  +P+++
Sbjct: 1011 IERLADGGKH--VPVVV 1025



 Score = 29.3 bits (64), Expect = 0.002
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 362 LTAIVLVVIASHYL-SNFITSPLLKLTWAAERVSAGDLDEAMINTERKDEIGRLA 415
           L A + V  A  +L + F+  PL +L     R++  D    +   ERKDE+G LA
Sbjct: 206 LVATLCVAAAGVFLGAMFMARPLRRLAEQMTRLAENDRTIEVSYAERKDEVGTLA 260