Pairwise Alignments

Query, 1129 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1234 a.a., Sensor histidine kinase RcsC from Pseudomonas lactucae CFBP13502

 Score =  226 bits (575), Expect = 1e-62
 Identities = 189/681 (27%), Positives = 313/681 (45%), Gaps = 78/681 (11%)

Query: 358  VFAMLTAIVLVVIASHYLSNFITSPLLKLTWAAERVSAGDLDEAMINTERKDEIGRLA-- 415
            + A   AI+L    +   S F+  P++ L     R++AGDL   + + ER DEIG +   
Sbjct: 426  IIAGTVAILLAGAIAWSTSRFVAQPIVALASVMRRLAAGDLRTGIASVERGDEIGIMTRA 485

Query: 416  -----------------VSFERMQ------RSIREKISLIKSQNKELESNLLIIRKQNDE 452
                                ER Q      R + E+   +  Q + LE+  + + +  ++
Sbjct: 486  VRVFQENALRIRVLEAEAEAERQQVQASLERMVAERTDTLHHQTEVLEAQAIELIQARNQ 545

Query: 453  LQLANKLKDEFLATTSHELRTPLHGMIGIAEALISGANGPISAAHKYQLDIIISSGQRLA 512
               AN+ K +F+AT SHELRTPL  ++   E L +    P  A  + Q++    +  RL 
Sbjct: 546  ADSANQAKSDFVATVSHELRTPLTLILAPLEQLSAATLVP--ADWRVQIERAQRNALRLM 603

Query: 513  TLVDDLLDYHKMRYGALDIQRCAVDLSSATRLVLELSHHLLGKKTLRIINQVSEQPVWVS 572
              V+D+LD+ K   G  ++    VDL++A   + E +  +   K   +   +      V 
Sbjct: 604  NRVNDILDFSKAEAGKFEVCPTLVDLNNAVGGLAEDAAMVAEGKGCTLTCSIDPALGTVF 663

Query: 573  ADPQRLEQVLYNLIGNAIKYTSEGKIV-ISATYID-DKVRVQVVDTGQGIPAEQLEHIFE 630
             DP+  E++L NL+ NAIK+T  G  V ++ T +D ++  + V D+G GI  E+L  +F+
Sbjct: 664  LDPRHFEKILLNLVSNAIKFTPAGGTVHLAVTPLDGERFELAVQDSGIGIAPEELPLLFQ 723

Query: 631  PLIQAGHDASRYRQGAGLGLSISRQLIELMHGTLYVSSQPMVGTTFSFTLPLASEEEIAQ 690
               Q  + A+R+  G G+GL++ + L+ELM G + VSS+P  G+ F   LPL +E+    
Sbjct: 724  RFSQIDNSATRHYSGTGIGLALVKDLVELMGGEVGVSSEPGRGSCFFVRLPLGAEQNALL 783

Query: 691  ARLTELPHFQAPEVLDSELPEQSNLPENEHG-----------------PLLLVADDEPVN 733
            +  + +    +P    +         +  HG                   +LV DD P  
Sbjct: 784  SEASTMHEPSSPSTASTTEQRHLRFDDGRHGSPAQGVDDEQHPEHAARSKVLVVDDSPEM 843

Query: 734  LRVLDSFLRLEGYRVHTAQDGHQVLEAIKREKPELVLLDIMMPGMSGYQVCEKLRQTYDH 793
            L  L   LR + Y V TA DG Q    ++R   ++V+ D+MMP + G+ +  +++ +   
Sbjct: 844  LSYLSELLR-DDYVVATAVDGEQAWALLQRRPIDVVVSDVMMPLLDGFGLTARIKGSPGF 902

Query: 794  AELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHLTASKAELRRIENAQ 853
            A LP+I++TA   SD  V G E+GA+DY++KPF+  EL AR+ A L  S          Q
Sbjct: 903  AHLPVILVTARGGSDACVSGLESGADDYIAKPFSPLELKARVRAALRMS----------Q 952

Query: 854  LQKELKHRAMVEASLLETQGRLLEQLESAPEAILCVKEGNKVRFANEAAARLFRRTPEQL 913
            +Q EL H    +A + E    +L  +            GN +   N +A  +      Q+
Sbjct: 953  VQSEL-HAKSRQAGMAEIATAVLHNV------------GNVLNSVNVSADLV----SNQM 995

Query: 914  KRSNAEELIAPKFLNIEQEHYCGNIDVYVDDVRQHLSAD-VLRLPQGSGLQAMYIFNVGG 972
            + S  + L   K   +  EH     D   +D +  +  D +L+L +    +   I    G
Sbjct: 996  RTSKVQGL--GKVAQLMNEHVDDLSDFLANDPKGKMLPDYLLKLAEVVTAEQQGIVEELG 1053

Query: 973  SVNAARIHNLETAVEALSSYA 993
             +    I +++T V A  SYA
Sbjct: 1054 QLTKG-IDHIKTIVAAQQSYA 1073