Pairwise Alignments

Query, 1129 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 995 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  189 bits (479), Expect = 1e-51
 Identities = 131/406 (32%), Positives = 197/406 (48%), Gaps = 27/406 (6%)

Query: 437 KELESNLLIIRKQNDELQLANKLKDEFLATTSHELRTPLHGMIGIAEALISGANGPISAA 496
           KE+E+ L   R+     + ANK K  FLA  SHE+RTP++G+IG+A   + G    + A 
Sbjct: 446 KEIEAQL---RESKSVAEAANKAKSLFLANMSHEIRTPMNGIIGMAHLALGGE---LPAK 499

Query: 497 HKYQLDIIISSGQRLATLVDDLLDYHKMRYGALDIQRCAVDLSSATRLVLELSHHLLGKK 556
            ++ +  I  S QRL  +++D+LD  K   G + I     DL++     + +      +K
Sbjct: 500 QRHHIQSIKQSAQRLLGIINDILDLSKAEAGKVVIDAAPFDLANLIDEAISVVAAQASEK 559

Query: 557 TLRI-INQVSEQPVWVSADPQRLEQVLYNLIGNAIKYTSEGKIVISA------TYIDDKV 609
            L I +   SE P  V  DP R+ Q+L N + NA+K+TS G I +        T    K+
Sbjct: 560 RLPINVRIASEVPRGVIGDPLRIRQILLNYLSNAVKFTSSGGIDVDVQIEGGKTAPPTKL 619

Query: 610 RVQVVDTGQGIPAEQLEHIFEPLIQAGHDASRYRQGAGLGLSISRQLIELMHGTLYVSSQ 669
           R  V DTG G+  EQ   +F+   QA    S    G GLGL+I+RQL ELM G   V SQ
Sbjct: 620 RFAVSDTGCGLTPEQQATLFQSFQQAEASTSAKFGGTGLGLAIARQLAELMGGQAGVESQ 679

Query: 670 PMVGTTFSFTLPLASEEEIAQARLTELPHFQAPEVLDSELPEQSNLPENEH----GPLLL 725
              G+TF FT+      +              P    S +   +N    +H    G  +L
Sbjct: 680 YGSGSTFWFTVQFQGAVD----------GVDCPSKFLSPIKIHNNFAHQDHSILQGAQVL 729

Query: 726 VADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREKPELVLLDIMMPGMSGYQVCE 785
           +A+D+  N  V    L   G  V    +G   +E     K E+VL+D+ MPGM G     
Sbjct: 730 LAEDDLTNQMVAVGLLEAAGMLVDVVGNGAAAVEKAASGKYEIVLMDVRMPGMDGITATR 789

Query: 786 KLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQEL 831
            +R+  +  +LPI+ +TA   ++ +     AG +D++SKPF  ++L
Sbjct: 790 LIRENVELLDLPIVAMTANAMNEHKDECLAAGMSDFVSKPFQPEQL 835