Pairwise Alignments

Query, 1129 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1186 a.a., HAMP domain-containing protein from Magnetospirillum magneticum AMB-1

 Score =  187 bits (476), Expect = 3e-51
 Identities = 132/451 (29%), Positives = 223/451 (49%), Gaps = 10/451 (2%)

Query: 404 NTERKDEIGRLAVSFERMQRS---IREKISLIKSQNKELESNLLIIRKQNDELQLANKLK 460
           N E +     L V  E +Q +   +R K   ++ + K LE       ++  +++ A++ K
Sbjct: 468 NEELRVSEEELKVQQEALQTANEELRLKSEALEERGKALEDARAEADRRALDVEQASRYK 527

Query: 461 DEFLATTSHELRTPLHGMIGIAEALISGANGPISAAHKYQLDIIISSGQRLATLVDDLLD 520
            EFLA  SHELRTPL+ ++ +A  L     G +S        +I  SG  L  L++D+LD
Sbjct: 528 SEFLANMSHELRTPLNSVLILARDLADNDTGNMSDDQVESARVIHESGTHLLALINDVLD 587

Query: 521 YHKMRYGALDIQRCAVDLSSATRLVLELSHHLLGKKTLRIINQVS-EQPVWVSADPQRLE 579
             K+  G + +    + ++   +++      +   K L    +V  + P  + AD  ++E
Sbjct: 588 LSKVEAGKMTLDPVTIAIADLVQVIRGRFAPVATDKGLGFQVEVDPDLPRSLKADRGKIE 647

Query: 580 QVLYNLIGNAIKYTSEGKIVISATYIDD--KVRVQVVDTGQGIPAEQLEHIFEPLIQAGH 637
           Q+  NL+ NAIK+TSEG + +  +   D   + + V DTG GI  +  + +F    QA  
Sbjct: 648 QIANNLVSNAIKFTSEGGVTVRLSLTGDGHVLALSVADTGIGIAPQDRQRVFAAFEQADS 707

Query: 638 DASRYRQGAGLGLSISRQLIELMHGTLYVSSQPMVGTTFSFTLPLASEEEIAQARLTELP 697
             SR   G GLGL+ISR+L  LM G + + +    G+ F+  LPLA   ++   R    P
Sbjct: 708 GTSRQFGGTGLGLTISRKLARLMGGDITLDANGDKGSVFTLLLPLAGTTQLPAPRCAPEP 767

Query: 698 HFQAPEVLDSELPEQSNLPENEHGPLLLVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQV 757
              +              P+ E G LLLV +D+P+  RV+    + +G+   TA DG   
Sbjct: 768 RPASARPSPPAAEAIEETPKAE-GKLLLVIEDDPIFRRVVCDMAQAKGFATATAGDGKTG 826

Query: 758 LEAIKREKPELVLLDIMMPGMSGYQVCEKLRQTYDHAELPIIMLTALNQSDDRVRGFEAG 817
           LE  +  +P  V+LDI +P MSG++V E L+   +  ++P+ +++A    D+  R    G
Sbjct: 827 LELARLRRPSGVVLDIGLPDMSGWEVIEALKLQPETRDIPVHVMSA---GDEPGRAARLG 883

Query: 818 ANDYLSKPFNKQELAARIVAHLTASKAELRR 848
              +L+KP +++++       L A +A+ RR
Sbjct: 884 TVGHLTKPVSREQINGAFEVLLRARRADGRR 914



 Score = 85.9 bits (211), Expect = 2e-20
 Identities = 50/112 (44%), Positives = 66/112 (58%), Gaps = 1/112 (0%)

Query: 721  GPLLLVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIK-REKPELVLLDIMMPGMS 779
            G   L+ DD+  N   L   LR  G +V  AQDG + L  ++ R   +LVL+DIMMPGM 
Sbjct: 1058 GRTALLVDDDMRNAFALSKVLRARGLKVLIAQDGAKALSQLQSRADVDLVLMDIMMPGMD 1117

Query: 780  GYQVCEKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQEL 831
            GYQ   ++R+    A LPII LTA   + DR R   AGA+DYL+KP + + L
Sbjct: 1118 GYQTMGEIRKDPRFAHLPIIALTAKAMAGDRDRCLAAGADDYLTKPVDVERL 1169



 Score = 33.9 bits (76), Expect = 8e-05
 Identities = 26/117 (22%), Positives = 58/117 (49%), Gaps = 10/117 (8%)

Query: 361 MLTAIVLVVIASHYLSNFITSPLLKLTWAAERVSAGDLDEAMINTERKDEIGRLAVSFER 420
           +L  ++L  + +  ++  I  PL +L     R++ G+LD  + N  R  E+ R+A++ E 
Sbjct: 203 LLALLILGTLLARTITRSIVIPLGELRDVMHRLAKGELDAHVPNQSRVTEVSRMALAVE- 261

Query: 421 MQRSIREKISLIKSQNKELESNLLIIRKQNDELQLANKLKDEFLATTSHELRTPLHG 477
               + ++ +L   +++ ++ NL    + +  LQ  + + +    TT+ +   PL G
Sbjct: 262 ----VFKQAALRLERDRWIKDNL---ARLSPALQQTDSIAE--FGTTALDFLVPLSG 309