Pairwise Alignments

Query, 1129 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 956 a.a., PAS domain S-box from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  194 bits (493), Expect = 3e-53
 Identities = 114/397 (28%), Positives = 217/397 (54%), Gaps = 17/397 (4%)

Query: 446 IRKQNDELQLANKLKDEFLATTSHELRTPLHGMIGIAEALISGANGPISAAHKYQLDIII 505
           +++  +  + AN+ K EFLA+ SHE+RTP++G++G+   L    +  +    +  + +I 
Sbjct: 562 LKEAKEVAEGANRAKSEFLASMSHEIRTPMNGLLGMIGLL---EHTKMDDEQQSIVKVIK 618

Query: 506 SSGQRLATLVDDLLDYHKMRYGALDIQRCAVDLSSATRLVLEL-SHHLLGKKTLRIINQV 564
            SG+ L  ++ D+LDY K+  G L+++  +         V+ + S  ++GK+    ++  
Sbjct: 619 DSGESLLVIIKDILDYSKIEEGKLELELSSSKFREELNKVINIFSGMVVGKELSLNLDIA 678

Query: 565 SEQPVWVSADPQRLEQVLYNLIGNAIKYTSEG---KIVISATYIDDK---VRVQVVDTGQ 618
              P W+  D ++L Q+L+N+IGNA+K+T +G    I +S   I DK   +   V DTG 
Sbjct: 679 PTIPQWLILDNEKLSQILFNIIGNAVKFTPKGGDVSIKVSGEPILDKNFMLYFNVKDTGV 738

Query: 619 GIPAEQLEHIFEPLIQAGHDASRYRQGAGLGLSISRQLIELMHGTLYVSSQPMVGTTFSF 678
           GIP  +++ +  P  Q G   +  + G+GLGL+I+ +LIELM G+L + S+   G+ FSF
Sbjct: 739 GIPKSKIDQLINPFTQTGRGTAEEKSGSGLGLAIANKLIELMGGSLQIESEVGKGSEFSF 798

Query: 679 TLPLASEEEIAQARLTELPHFQAPEVLDSELPEQSNLPENEHGPLLLVADDEPVNLRVLD 738
           T+     +   +    +   +   E   S + ++   P+      +L+A+D  +NL+ + 
Sbjct: 799 TVFARISDSEEKVGKDDYEKYAKEEYKLSHISDK--FPKE-----ILLAEDNDINLKFMK 851

Query: 739 SFLRLEGYRVHTAQDGHQVLEAIKREKPELVLLDIMMPGMSGYQVCEKLRQTYDHAELPI 798
             ++  GY V T   G + ++A+++++ +++ +D  MP M G +   ++++  +   + I
Sbjct: 852 LLMKQLGYSVDTVSTGEEAVKAVQKKRYDMIFMDYQMPVMDGLEASREIKKMKEGKYIRI 911

Query: 799 IMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARI 835
           I L+A    +D  R +EAG +DYL+KP   Q++  +I
Sbjct: 912 IGLSANVFKEDIERAYEAGMDDYLTKPIKIQDVVMKI 948