Pairwise Alignments

Query, 556 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) from Pseudomonas fluorescens GW456-L13

 Score = 96.3 bits (238), Expect = 3e-24
 Identities = 129/545 (23%), Positives = 227/545 (41%), Gaps = 81/545 (14%)

Query: 7   KTALAAAVIAAATSVSAP-AFARSELTIVPDFYPTMVRNFNPYLATNLRTTTDFIYEPLV 65
           K A+   ++ A+   SAP A A + L    +  P     F+P   T   T TDF      
Sbjct: 3   KHAVIPFLVGASLLASAPFAQAATNLVFCSEGSPA---GFDPGQYT---TGTDFDASAET 56

Query: 66  VFNEM----KGNTPVFR-LAESYKMADDLMSVTFDIRKGVK------WSDGEAFTADDVV 114
           +FN +    +G T V   LA  + ++DD ++ TF +R+GVK      +     F ADDV+
Sbjct: 57  MFNRLTQFERGGTAVVPGLATKWDVSDDGLTYTFHLREGVKFHTTPYFKPTREFNADDVL 116

Query: 115 YSFGLLKAK------------PELDQRGINKWVTSVEKVDEYKVRFRLSEANS----NVP 158
           ++F  +  K            P     G++  +T ++KVD++ V+F L + ++    N+ 
Sbjct: 117 FTFNRMINKDDPFRKAYPTEFPYFTDMGMDTNITKIDKVDDHTVKFTLKDVDAAFIQNMA 176

Query: 159 YEISLIPIVAEHVWKDVKD-PTTFTNENPVGTGPFTVIDTFTPQLYIQ-CRNPNYWDAAN 216
              + I   AE+  + +K+      N+ PVGTGPF V  ++     I+   N +YW   +
Sbjct: 177 MSFASIQ-SAEYAAQLLKEGKAADINQKPVGTGPF-VFKSYQKDSNIRYTGNKDYWKPDD 234

Query: 217 LEVDCLRVPQIANNDQLLGKIVNSELDWTSSFVPDIDRTYAAANPNHHYWYPA-----AG 271
           +++D L      +    + K+  +E   T    P       A   +     P       G
Sbjct: 235 VKIDNLIFAITTDPSVRIQKLKKNECQVTLFPRP---ADLKALKEDKSLKMPEQAGFNLG 291

Query: 272 TQAFMVNFKNPDPAKKEALDNVDFRRAFSMALDRQTIIDIAFYGSG--TVNDFASGLGYA 329
             A+ V  K     K   +  +  R+A  MA+++Q IID  + G+G   VN         
Sbjct: 292 YIAYNVMDKIKGDDKPNPMSQLKVRQAMDMAVNKQQIIDSVYQGAGQLAVNAMPP----- 346

Query: 330 FEAWSDEATHKKYKGFNTYDVEGSKKLLAKAGFKDVNGDGFVETPSGKSFELLIQSPNGW 389
              WS + T K  K    YD E +K+LL +AG K+               E+++ +    
Sbjct: 347 -TQWSYDTTIKDAK----YDPEKAKELLKEAGVKE-------------GTEIVLWAMPVQ 388

Query: 390 TDFNNTVQLAVEQLQ----EVGIKAKARTPEFAVYNQAMLEGTYDVAYTNYF-HGADPFT 444
             +N   +L  E LQ    ++G+K K ++ E+  Y +    G        +     DP  
Sbjct: 389 RPYNPNAKLMAEMLQSDWAKIGLKVKIQSYEWGEYIKRSKGGENGAMLIGWSGDNGDPDN 448

Query: 445 YWNSGYNSALQSGDGMPRFAMHYFTDKKLDGLLDSFYKTADKNEQLAIAHGIQKIIAENQ 504
           + N  +      G+   ++      DKK D ++    +T+D+ ++  +    Q ++ +  
Sbjct: 449 WLNVLFGCDSLEGNNFSKWC-----DKKFDDIVKQAKRTSDQGKRTELYKQAQHVLKDAV 503

Query: 505 VTIPV 509
              P+
Sbjct: 504 PMTPI 508