Pairwise Alignments

Query, 556 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 536 a.a., Periplasmic dipeptide transport protein from Xanthobacter sp. DMC5

 Score =  109 bits (273), Expect = 2e-28
 Identities = 130/520 (25%), Positives = 213/520 (40%), Gaps = 58/520 (11%)

Query: 9   ALAAAVIAAATSVSAPAFARSELTIVPDFYPTMVRNFNPYLATNLRTTTDFIYEPLVVFN 68
           +LAA  +A A   S          +VP+     +   NP +   +      +Y+ LV ++
Sbjct: 16  SLAAVPMARAADGSPVRGGHLVSIVVPEPQTLGLTVSNPTIVIAIN-----VYDGLVTYD 70

Query: 69  EMKGNTPVFRLAESYKMADDLMSVTFDIRKGVKWSDGEAFTADDVVYSFGLLKAKPELDQ 128
                 P  +LAESY+ A D  S+TF +RKGV W DG  FTA DV YS  +L+   +   
Sbjct: 71  GTGAPRP--QLAESYEQAPDGRSITFRLRKGVTWHDGVPFTAADVKYS--ILEVVKKTHP 126

Query: 129 RGINKW--VTSVEKVDEYKVRFRLSEANSNV--PYEISLIPIVAEHVWKDVKDPTTFTNE 184
           RGI  +  +  +E  D++ V  RL++ +  +      S   I+ +H+++     T   N 
Sbjct: 127 RGIGTYSQLQDIETPDDHTVILRLAKPSPVIWSALNSSETQILPKHLYEGTDPLTNPWNT 186

Query: 185 NPVGTGPFTVIDTFTPQLYIQCRNPNYWDAANLEVDCLRVPQIANNDQLLGKIVNSELDW 244
            P+GTGPF   +          RNPNYWDA    +D L    + +       +   E  +
Sbjct: 187 KPIGTGPFIFKEWVRGSHVTLERNPNYWDAGKPYLDRLTFRFVPDAGARAAALETGEAQY 246

Query: 245 TS-SFVPDIDRTYAAANPN----HHYWYPAAGTQAFMVNFKNPDPAKKEALDNVDFRRAF 299
              S VP  D    A  P+       W   A       N + P         +V  RRA 
Sbjct: 247 VPLSPVPLSDVERLAKRPDLVVETRGWEAVAPVFFLDFNMRRPQ------FQDVRVRRAI 300

Query: 300 SMALDRQTIIDIAFYGSGTVNDFASGLGYAFEAWSDEATHKKYKGFNTYDVEGSKKLLAK 359
           ++A+D++ +    +YG     + A+G   AF+         +Y     YD + ++ LL +
Sbjct: 301 ALAIDKKALARTVWYGFA---EPATGPVPAFQTAFAATGLPQY----DYDPKKAEALLDE 353

Query: 360 AGFKDVNGDGFVETPSGKSFELLIQSPNGWTDFNNTVQLAVEQLQEVGIKAKARTPEFAV 419
           AG K          P G        S     DF  + +   +QL++VGI+ +    +   
Sbjct: 354 AGLK--------RGPDGVRLRFNHVSIPYGDDFKRSGEFIRQQLKKVGIEVELLNYDLPT 405

Query: 420 Y-NQAMLEGTYDVAYTNYFHGADP-----FTYWNSGY--NSALQSGDGMPRFAMHYFTDK 471
           +  +   E  +D     Y   ADP       +W+      SA  +  G        +++ 
Sbjct: 406 FLRKIYTEYDFDTLNAYYAAFADPQIGVQRRFWSQTIRPGSAWSNASG--------YSNP 457

Query: 472 KLDGLLDSFYKTADKNEQLAIAHGIQKIIAENQVTIPVMS 511
           K+D LL++     D  ++ A+    Q I+   Q  +P +S
Sbjct: 458 KVDALLEAAAVEPDPQKRKALLGEFQLIV---QTELPSIS 494