Pairwise Alignments

Query, 556 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 535 a.a., Oligopeptide-binding protein AppA from Xanthobacter sp. DMC5

 Score =  104 bits (259), Expect = 1e-26
 Identities = 129/540 (23%), Positives = 226/540 (41%), Gaps = 75/540 (13%)

Query: 10  LAAAVIAAAT-SVSAPAFARSELTIV---PDFYPTMVRNFNPYLATNLRTTTDFIYEPLV 65
           L AAV+A    S   P    + +TI+   P    T V N     A ++      IY+ LV
Sbjct: 19  LPAAVLAQTVPSEGTPKRGGTLVTIIQPEPTVLTTTVNNQFSNGAVSVN-----IYDGLV 73

Query: 66  VFNEMKGNTPVFRLAESYKMADDLMSVTFDIRKGVKWSDGEAFTADDVVYSFGLLKAKPE 125
            +++  G  P   LAES++++ D +++TF +R GVKW DG  FT+ DV   F  L+   +
Sbjct: 74  AYDDNLGLKPA--LAESWEISPDKLTITFHLRHGVKWHDGAPFTSADV--RFSALEIWKK 129

Query: 126 LDQRGINKW--VTSVEKVDEYKVRFRLSEANSNVPYEISLI--PIVAEHVWKDVKDPTTF 181
           +  RG   +  +  VE  D Y   FR    +  V   ++     ++ +H++++       
Sbjct: 130 VHSRGRLTFAELEDVETPDAYTAIFRFRAPSLVVLSALNAWEGQVLPKHLYENTDILKNP 189

Query: 182 TNENPVGTGPFTVIDTFTPQLYIQCRNPNYWDAANLEVDCLRVPQIANNDQLLGKIVNSE 241
            N  PVGTGPF        +     RN +YWDA    +D +    I +       I   +
Sbjct: 190 HNVEPVGTGPFKFKSWTKGEAIELVRNADYWDAGKPYLDRVIYRFIPDGGARAAAIEIGD 249

Query: 242 LDWTSSFVP----DIDRTYAAAN----PNHHYWYPAAGTQAFMVNFKNPDPAKKEALDNV 293
           + + ++F P    DI+R     N       + W   A       N +NP       L ++
Sbjct: 250 VGY-AAFDPVPFADIERVRKLPNLKVESRGYEW--NAKYYFLEFNLRNP------ILADI 300

Query: 294 DFRRAFSMALDRQTIIDIAFYG-----SGTVNDFASGLGYAFEAWSDEATHKKYKGFNTY 348
             RRAF+ A+DRQ + D  ++G     +G +  F      A     D  T+        +
Sbjct: 301 RVRRAFAHAIDRQGLADTVWFGLVAPATGPIPSFTKAFYTA-----DVPTY-------AF 348

Query: 349 DVEGSKKLLAKAGFK-DVNGDGFVETPSGKSFELLIQSPNGWTDFNNTVQLAVEQLQEVG 407
           D + +++LL +AG+K   NG  F      + F           +F  T +   + L+ VG
Sbjct: 349 DPKEAERLLDEAGYKRGANGVRFSINQDFQPFN---------ENFRKTAEYIRQNLKRVG 399

Query: 408 IKAKARTPEFAVYNQAMLEGTY--DVAYTNYFHGADP-----FTYWNSGYNSALQSGDGM 460
           ++   R+ +   + + +  G+Y  D+    +    DP       +W+           G+
Sbjct: 400 VEVNVRSQDLGAFVRRVY-GSYDFDINTGQFSVFIDPELGLLRQFWSKSI------APGI 452

Query: 461 PRFAMHYFTDKKLDGLLDSFYKTADKNEQLAIAHGIQKIIAENQVTIPVMSGAWMYQYNT 520
           P      + D   D +++     AD  +++A+ H +Q+ +  +   +P++       YNT
Sbjct: 453 PWTNASGYADPGTDKVIEGIKSAADPEQRVALFHELQRRVQRDLPVLPLLELKQFTVYNT 512