Pairwise Alignments

Query, 556 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 547 a.a., Oligopeptide-binding protein AppA from Xanthobacter sp. DMC5

 Score =  124 bits (310), Expect = 1e-32
 Identities = 140/524 (26%), Positives = 228/524 (43%), Gaps = 61/524 (11%)

Query: 9   ALAAAVIAAATSVSAPAFARSE-LTIVPDFYPTMVRNFNPYLATNLRTTTDFIYEPLVVF 67
           A AAA + AA + S P   R   L  + +  P+ + +   + A   +  +  + E L+ +
Sbjct: 32  AAAAAPVWAADAQSTPQPVRGGVLRFLVEHEPSTLVSI-AHTAGPTQRVSPKVTEGLLAY 90

Query: 68  NEMKGNTPVFRLAESYKMADDLMSVTFDIRKGVKWSDGEAFTADDVVYSFGLLKAKPELD 127
           +      P   LA  + ++ D ++ TF +R+GVKW DG  FTADDV YS  LLK   E  
Sbjct: 91  DLDFNPKPA--LATEWSVSPDGLTYTFKLREGVKWHDGRDFTADDVAYSIQLLK---EGH 145

Query: 128 QRGINKW--VTSVEKVDEYKVRFRLSEANSNVPYEISLI-----PIVAEHVWKDVKDPTT 180
            RG   +  VT+VE  D +    RLS+     PY ++ +     PIVA+H++      T 
Sbjct: 146 PRGRATFASVTAVETPDPHTAIIRLSKP---APYLLTALDANESPIVAKHIYAGTDPLTN 202

Query: 181 FTNENPVGTGPFTVIDTFTPQLYIQCRNPNYWDAANLEVDCLRVPQIANNDQLLGKIVNS 240
                P+GTGPF   +       I  RNP+YWDA    +D + V  IA+           
Sbjct: 203 KNGAAPIGTGPFLFKEWVRGSHIILERNPDYWDADKPYLDRVVVRFIADQSARAAAFETG 262

Query: 241 ELDWTSS-FVPDIDRTYAAANPN-----HHYWYPAAGTQAFMVNFKNPDPAKKEALDNVD 294
           ELD      VP  D     A PN       Y Y    TQ +  NF  P    K       
Sbjct: 263 ELDLAGGPPVPRSDLARVQALPNLGSETRGYEYNGNMTQLYF-NFDTPQLKDKRV----- 316

Query: 295 FRRAFSMALDRQTIIDIAFYGSGTVNDFASGLGYAFEAWSDEATHKKYKGFNTYDVEGSK 354
            R A + ALD   ++D+ ++G GT+    S +G   + + D +  K Y     +D++ + 
Sbjct: 317 -RLAIAQALDLNKLLDVVYFGYGTI--APSPVGPDLKKFVDPSI-KPY----PFDLKAAN 368

Query: 355 KLLAKAGFKDVNGDGFVETPSGKSFEL-LIQSPNGWTDFNNTVQLAVEQLQEVGIKAKAR 413
           +LL +AG+             G  F L L  +P    +  + V+ A   L +VGI    +
Sbjct: 369 RLLDEAGYP--------RKADGTRFALRLYANPFNGRESGDFVKQA---LAKVGIPVDFQ 417

Query: 414 TPEFAVYNQAMLEG-TYDVAYTNYFHGADPF-----TYWNSGYNSALQSGDGMPRFAMHY 467
             +F+ Y Q    G  +D+   +  +  DP       +W+  +        G+P     +
Sbjct: 418 FFDFSTYIQKAYTGREFDLTLESLSNTFDPTPGIQRIFWSKNFKI------GLPFSNASH 471

Query: 468 FTDKKLDGLLDSFYKTADKNEQLAIAHGIQKIIAENQVTIPVMS 511
           + + ++D LL++    +D  ++  I    QK I ++   + +++
Sbjct: 472 YDNPQVDALLEAGAVESDPEKRRQIWFAFQKAIHDDVAAVHLIA 515