Pairwise Alignments

Query, 556 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 533 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score = 91.7 bits (226), Expect = 7e-23
 Identities = 133/546 (24%), Positives = 223/546 (40%), Gaps = 72/546 (13%)

Query: 5   IKKTALAAAVIAAATSVSAP-AFARSELTIVPDFYPTMVRNFNPYLATNLRTTTDFIYEP 63
           +++ AL   ++AA      P A A S L    +  P     F+P   T+    TDF    
Sbjct: 1   MERIALKPLLLAAGLLACMPLAQAASTLVYCSEASPA---GFDPSQYTS---GTDFDASA 54

Query: 64  LVVFNEM----KGNTPVFR-LAESYKMADDLMSVTFDIRKGVKW------SDGEAFTADD 112
             VFN +    +G T V   LA S+ ++ D ++ TF +R GVK+      S    F ADD
Sbjct: 55  ETVFNRLTQFKRGGTEVEPGLATSWDISQDGLTYTFHLRDGVKFHTTDFFSPTRDFNADD 114

Query: 113 VVYSFGLL------------KAKPELDQRGINKWVTSVEKVDEYKVRFRLSEANSNVPYE 160
           V+++F  L               P     G+N  + SV+K+D++ VRF L+  +++    
Sbjct: 115 VLFTFNRLLDAQSPFRQAYPSESPYFTDMGLNTTIKSVDKLDDHTVRFNLNNVDASFVQN 174

Query: 161 ISL---IPIVAEHVWKDVKD-PTTFTNENPVGTGPFTVIDTFTPQLYIQ-CRNPNYWDAA 215
           +++       AE+  + +K       N+ PVGTGPF V   +     I+   N  YW   
Sbjct: 175 LAMSFASVQSAEYAAQLLKQGKAEEINQKPVGTGPF-VFKRYQKDSQIRYVANKQYWKPE 233

Query: 216 NLEVDCLRVPQIANNDQLLGKIVNSELDWTSSFVPDIDRTYAAANPNHHYWYPAAGTQAF 275
           ++++D L      +    L K+   E    S +    D      +PN H    A     F
Sbjct: 234 DVKLDNLVFAITPDAASRLQKLKAGECQ-VSGYPRPADIEVMKQDPNLHVLQQAGFNLGF 292

Query: 276 MV-NFKNPDPAKKEALDNVDFRRAFSMALDRQTIIDIAFYGSGTVNDFASGLGYAFEAWS 334
           +  N  +P       LD +  R+A  MA+D+  II   +  +G +   A         WS
Sbjct: 293 LAYNVTHP------PLDQLKVRQALDMAIDKPAIIKAVYQSAGQLAQNA----LPPAQWS 342

Query: 335 DEATHKKYKGFNTYDVEGSKKLLAKAGFKDVNGDGFVETPSGKSFELLIQSPNGWTDFN- 393
            + T K       YD   +K LL +AG              G +  L   +    ++ N 
Sbjct: 343 YDPTIKD----APYDPTKAKALLKEAG-----------VAPGTTVNLWAMTVQRASNPNA 387

Query: 394 -NTVQLAVEQLQEVGIKAKARTPEFAVYNQAMLEGTYD-VAYTNYFHGADPFTYWNSGYN 451
             + Q+  +  ++VGIKA   + E+  Y +    G +D + Y       DP  +    Y+
Sbjct: 388 RMSAQMIQQDWEKVGIKANIVSYEWGEYIKRAKNGEHDAMIYGWTGDNGDPDNWLGVLYS 447

Query: 452 SALQSGDGMPRFAMHYFTDKKLDGLLDSFYKTADKNEQLAIAHGIQKIIAENQVTIPVMS 511
            A   G    ++      +   D L+     + D+ +++      QKI+ E QV I  ++
Sbjct: 448 CAAVKGSNYAKWC-----NPAYDKLVQQAKVSNDREQRIKWYQQAQKILKE-QVPITPIA 501

Query: 512 GAWMYQ 517
            + ++Q
Sbjct: 502 NSTVFQ 507