Pairwise Alignments

Query, 556 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 542 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score = 93.6 bits (231), Expect = 2e-23
 Identities = 133/550 (24%), Positives = 228/550 (41%), Gaps = 91/550 (16%)

Query: 7   KTALAAAVIAAATSVSAP-AFARSELTIVPDFYPTMVRNFNPYLATNLRTTTDFIYEPLV 65
           K A+   +++A    +AP A A + L    +  P     F+P   T   T TDF      
Sbjct: 3   KHAVIPLIVSAGLMAAAPFAQAATNLVFCSEGSPA---GFDPGQYT---TGTDFDASAET 56

Query: 66  VFNEM----KGNTPVFR-LAESYKMADDLMSVTFDIRKGVKW------SDGEAFTADDVV 114
           +FN +    +G T V   LA S+ ++ D ++ TF +R GVK+           F ADDV+
Sbjct: 57  MFNRLTQFERGGTAVIPGLATSWDVSPDGLTYTFHLRDGVKFHTTSYFKPTRTFNADDVL 116

Query: 115 YSFGLLKAK------------PELDQRGINKWVTSVEKVDEYKVRFRLSEANS----NVP 158
           ++F  +  K            P     G++  + ++EKVDE+ V+F L   ++    N+ 
Sbjct: 117 FTFNRMINKDDPFRKAYPTEFPYFTDMGMDTNIKNIEKVDEHTVKFTLGTVDAAFIQNLA 176

Query: 159 YEISLIPIVAEHVWKDVKD-PTTFTNENPVGTGPFTVIDTFTPQLYIQ-CRNPNYWDAAN 216
              + I   AE+  + +K+      N+ P+GTGPF V  ++     I+   N +YW   +
Sbjct: 177 MSFASIQ-SAEYAAQLLKEGKPADINQKPIGTGPF-VFKSYQKDSNIRYTGNKDYWKPED 234

Query: 217 LEVDCLRVPQIANNDQLLGKIVNSELDWTSSFVPDIDRTYAAANPNHHYWYPAA---GTQ 273
           +++D L      +    + K+  +E   T  F    D      + +    + A    G  
Sbjct: 235 VKIDNLIFAITTDPSVRIQKLKKNECQIT-LFPRPADLKALGDDKDLKLPHQAGFNLGYI 293

Query: 274 AFMVNFKNPDPAKKEALDNVDFRRAFSMALDRQTIIDIAFYGSG--TVNDFASGLGYAFE 331
           A+ V  K     +   L ++  R+A  M++++Q IID  + G+G   VN           
Sbjct: 294 AYNVMDKVKGSDQPNPLADLRVRQALDMSVNKQQIIDSVYQGAGQLAVNAMPP------T 347

Query: 332 AWSDEATHKKYKGFNTYDVEGSKKLLAKAGFKDVNGDGFVETPSGKSFELLIQSPNGWTD 391
            WS + T K  K    YD E +K LL +AG K+               E+++ +      
Sbjct: 348 QWSYDTTIKDAK----YDPEKAKSLLKEAGIKE-------------GTEIVLWAMPVQRP 390

Query: 392 FNNTVQLAVEQLQ----EVGIKAKARTPEFAVY--------NQAMLEGTYDVAYTNYFHG 439
           +N   +L  E LQ    ++G+  K  + E+  Y        NQAM+ G            
Sbjct: 391 YNPNAKLMAEMLQNDWKKIGLNVKITSYEWGEYIKRSKGGENQAMIIGWSG-------DN 443

Query: 440 ADPFTYWNSGYNSALQSGDGMPRFAMHYFTDKKLDGLLDSFYKTADKNEQLAIAHGIQKI 499
            DP  + N  +     SG+   ++      DKK DG++     T+D  ++  +    Q I
Sbjct: 444 GDPDNWLNVLFGCDSLSGNNFSKWC-----DKKFDGIVKEAKATSDVAKRTELYKQAQHI 498

Query: 500 IAENQVTIPV 509
           + +     P+
Sbjct: 499 LKDAVPMTPI 508