Pairwise Alignments

Query, 556 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 530 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score = 84.7 bits (208), Expect = 8e-21
 Identities = 134/529 (25%), Positives = 221/529 (41%), Gaps = 63/529 (11%)

Query: 10  LAAAVIAAATSVSAP-AFARSELTIVPDFYPTM--VRNFNPYLATNLRTTTDFIYEPLVV 66
           LAA  +  A    AP A A S L++  +  P    V  +N    TN   + D +   LV 
Sbjct: 3   LAALPLLLAPLFIAPLASAASNLSVCTEASPEGFDVVQYNSLTTTN--ASADVLMNRLVD 60

Query: 67  FNEMKGNTPVFRLAESYKMADDLMSVTFDIRKGVKWSDGEAFT------ADDVVYSFGLL 120
           ++   G   V  LA+S++++ D ++ TF +   VK+   E FT      A+DV +SF  +
Sbjct: 61  YDAASGKL-VPSLADSWEVSPDGLTYTFKLHPDVKFHRTEYFTPSRTLTAEDVRFSFERM 119

Query: 121 ------------KAKPELDQRGINKWVTSVEKVDEYKVRFRLSEANSNVPYEISL---IP 165
                          P      +   V  ++ +D   VRF L  A+S     +S+     
Sbjct: 120 LDPANPWHKIAQSGFPHAQSLQLPTLVKKIDALDPLTVRFTLDHADSTFLAALSMGFASI 179

Query: 166 IVAEHVWKDVKDPTTFT-NENPVGTGPFTVIDTFTPQLYIQCR-NPNYWDAANLEVDCLR 223
             AE+  K +K  T    N  P+GTGPF +   F     ++ + NPNY+ A    VD L 
Sbjct: 180 YPAEYAEKLLKAGTPEKLNSQPIGTGPF-IFSRFQKDAVVRYKANPNYF-AGKPPVDNLI 237

Query: 224 VPQIANNDQLLGKIVNSELDWTSSFVPDIDRTYAAANPNHHYWYPAAGTQAFM-VNFKNP 282
                + +  L K+   E     S  P +D   A  +P       AA   AF+ +N ++P
Sbjct: 238 FAITPDANVRLQKLHRDECQIALSPKP-LDVGEAEKDPALKVEKTAAFMTAFLAINSQHP 296

Query: 283 DPAKKEALDNVDFRRAFSMALDRQTIIDIAFYGSGTVNDFASGLGYAFEAWSDEATHKKY 342
                  LD  + R+A ++A D+ + +   F G+      A+   Y    WS     K  
Sbjct: 297 ------PLDKPEVRQAINLAFDKGSYLKAVFEGTAE----AANGPYPPNTWS---YAKDL 343

Query: 343 KGFNTYDVEGSKKLLAKAGFKDVNGDGFVETPSGKSFELLIQSPNGWTDFNNTVQLAVEQ 402
            G+   D+  +K LL +AG KD         P+G    LL  +P      N   QL    
Sbjct: 344 PGY-PQDLAKAKALLDRAGLKDGFKTTIWTRPTG---SLLNPNP------NLGAQLLQAD 393

Query: 403 LQEVGIKAKARTPEFAVYNQAMLEGTYDVAYTNYF-HGADPFTYWNSGYN-SALQSGDGM 460
           L +VGI+A+ R  E+    +    G +D+ +  +     DP  +    ++ +A++SG   
Sbjct: 394 LAKVGIQAEIRVIEWGELIRRAKAGEHDLLFMGWAGDNGDPDNFLTPQFSCAAVKSGTNF 453

Query: 461 PRFAMHYFTDKKLDGLLDSFYKTADKNEQLAIAHGIQKIIAENQVTIPV 509
            R+      D  LD L+ +   T+++  +  +    Q  I +  + +P+
Sbjct: 454 ARYC-----DPALDKLISAGKTTSEQGVRSKLYQQAQAQIQQQALWLPL 497