Pairwise Alignments

Query, 556 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 504 a.a., diguanylate cyclase from Pseudomonas simiae WCS417

 Score = 94.0 bits (232), Expect = 1e-23
 Identities = 119/465 (25%), Positives = 199/465 (42%), Gaps = 72/465 (15%)

Query: 10  LAAAVIAAATSVSAPAFARSELTIVPDFYPTMVRNFNPYLATNLRTTTDF--IYEPLVVF 67
           LAAA + A +  +  A A   LTI      T    F+P  +   R T  F  +Y+ LV  
Sbjct: 9   LAAATLTAWSLTAGLAQAAGVLTIGCREDST---TFDPIKSAQNRDTWVFANVYDTLVRV 65

Query: 68  NEMKGNTPVFRLAESYKMADDLMSVTFDIRKGVKWSDGEAFTADDVVYS----------- 116
           + + G      LAES+ ++ D ++ TF +R   K+SDG A TADD  +S           
Sbjct: 66  DNL-GTKMEPGLAESWDISKDGLTYTFKLRDA-KFSDGSAITADDAAFSLLRIRDNKASL 123

Query: 117 ----FGLLKAKPELDQRGINKWVTSVEKVDEYKVRFRLSEANSNVPYEISLIPIVAEHVW 172
               F L+      D +      T V  +    V F    A+  V        I++E   
Sbjct: 124 WADPFNLINTAKASDPK------TLVVTLKTPAVAFLSQLASPTVS-------ILSEKAM 170

Query: 173 KDVKDPTTFTNENPVGTGPFTVIDTFTPQLYIQCRNPNYWDAANLEVDCLRVPQIANNDQ 232
             + +     +ENPV +G FTV +       I  +NPN+W A N+ +D +    + +++ 
Sbjct: 171 TKMGEDAY--SENPVTSGAFTVDEWRKGDRVILKKNPNFWQAKNVSLDGVEWVSVTDDNT 228

Query: 233 LLGKIVNSELDWTSSFVP--DIDRTYAAANPNHHYWYPAAGTQAFMVNFKNPDPAKKEAL 290
            +  + N+ELD T+ FVP   ++      N   H   P+      ++N ++   AK E  
Sbjct: 229 RMRMVQNNELD-TAIFVPFSRVEELKKDKNVVIHA-DPSTREDHLLINHEHGLLAKPEV- 285

Query: 291 DNVDFRRAFSMALDRQTIIDIAFYGSGTVNDFASGLGYAFEAWSDEATHKKYKGFNTYDV 350
                R+A  MA+D+Q+++  A YG GTV        Y++        H        YD 
Sbjct: 286 -----RQALDMAIDKQSLVKTATYGQGTV-------AYSYIP-KGSLYHYANNLQRPYDP 332

Query: 351 EGSKKLLAKAGFKDVNGDGFVETPSGKSFELLIQSPNGWTDFNNTVQLAVEQLQEVGIKA 410
             +KKLL +AG KD+  +  V   +    ++ +              +  +QL +VG+ A
Sbjct: 333 TAAKKLLEQAGAKDLKLNYVVNAGNEADEQIAV--------------IIKDQLAKVGVTA 378

Query: 411 KARTPEFAVYNQAMLEGTYDVA---YTNYFHGADPFTYWNSGYNS 452
             +  +     Q +++G YD++   +TN     D  T +  G+++
Sbjct: 379 NLQKVDPTQSWQMLVDGEYDISVMYWTNDILDPDQKTTFVLGHDT 423