Pairwise Alignments

Query, 556 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 497 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score = 85.1 bits (209), Expect = 6e-21
 Identities = 126/480 (26%), Positives = 193/480 (40%), Gaps = 91/480 (18%)

Query: 6   KKTALAAAVIAAATSVSAPAF----ARSELTIVPDFYPTMVRNFNPYLATNLRTTTDFIY 61
           ++T + +A+ AA   V  P       ++ LTI     P  +       +     T   I+
Sbjct: 4   RRTLMTSAMAAAIPGVFLPQARAQAGKNTLTIGMPLEPPGLDPTTGAASAIAEITQYNIF 63

Query: 62  EPLVVFNEMKGNTPVFRLAESYKMADDLMSVTFDIRKGVKWSDGEAFTADDVVYSF---G 118
           E L   N     TP+  LAES+  + D+ +  F +RKGV++ + + F A  V +SF   G
Sbjct: 64  ETLTKVNADGSVTPM--LAESWSSSPDMKTFVFKLRKGVRFENDQPFNAHTVKFSFDRAG 121

Query: 119 LLKAKPELDQRGINKWVTSVEKVDEYKVRFRLSEANSNVPYEISLIPIVAEHVWKDVKDP 178
             K+  + D+R  ++  T V  +DEY V    +  N ++P+      ++ +     V+  
Sbjct: 122 GAKSTNK-DKRFFSEIGTVV--LDEYTVGVNSTLPNPDLPF------MLGQSTACIVEPK 172

Query: 179 TTFTNEN-PVGTGPFTVIDTFTPQLYIQCRNPNYWDAANLEVDCLRVPQIANNDQLLGKI 237
           +  TN   PVGTGP+ +               + W        C  V   +  DQ L K+
Sbjct: 173 SADTNATAPVGTGPYKL---------------SAWQRG---ASCTLVKSPSYRDQNLAKV 214

Query: 238 VNSELDWTSSFVPDIDRTYAAANPNHHYWYPAAGTQAFMVNFKNPD-------------- 283
                 +   F+ D     AA   N    +P AGT++      NP               
Sbjct: 215 PK----FVFRFMSDTAAQTAALMANDIDIFPRAGTRSVAQFKGNPRFQVIEVGTRGKVIL 270

Query: 284 --PAKKEALDNVDFRRAFSMALDRQTIIDIAFYGSGTVNDFASGLGYAFEAWSDEATHKK 341
               +K+ LD+V  RRA   A+DR  II  A  G G       G  YA  A     T   
Sbjct: 271 TINNRKKPLDDVRVRRAILAAIDRNAIIQGAADGFGK----PIGSHYAMGAPGFVDT--- 323

Query: 342 YKGFNTYDVEGSKKLLAKAGFKDVNGDGFVETPSGKSFELLIQSPNGWTDFNNTVQLAVE 401
               N +D+E +KKLLA+AG         V+TP     EL +Q P   +      ++   
Sbjct: 324 -TAMNPFDIEKAKKLLAEAG---------VKTP----LELRLQLPPP-SYARQGGEMIAA 368

Query: 402 QLQEVGIKAKARTPEFAVYNQAMLEGTYDVAYTNYFHGADPFT---------YWNSGYNS 452
           QL ++GI  K +  E+A +      G +D   T   H  +PF          YW  GY+S
Sbjct: 369 QLAQIGINVKIQNVEWAQWLSGTFGGAHDFDLTMVAH-VEPFDLVKYTEADYYW--GYDS 425