Pairwise Alignments

Query, 556 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 527 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score = 94.0 bits (232), Expect = 1e-23
 Identities = 139/535 (25%), Positives = 214/535 (40%), Gaps = 58/535 (10%)

Query: 4   NIKKTALAAAVIAAATSVSAPAFARS-ELTIVPDFYPTMVRNFNPYLATNLRTTTDFIYE 62
           + KK   AAAV+ A  +VS  A A++  +    D       + N  L  ++   T  +YE
Sbjct: 2   SFKKNVAAAAVLCALGAVSMVASAQTIRIANQGDALSLDPHSLNESLQLSV---TANVYE 58

Query: 63  PLVVFNEMKGNTPVFRLAESYKMADDLMSVTFDIRKGVKWSDGEAFTADDVVYSFGLLKA 122
            LV  N+     P+  LA S+K     +   F++RKGV + DG  FTADDVV+SF   + 
Sbjct: 59  TLVGRNKDLSLAPL--LATSWKQTSPNVW-RFELRKGVVFHDGTPFTADDVVFSFARAQG 115

Query: 123 KPELDQRGINKWVTSVEKVDEYKVRFRLSEANSNVPYEISLIPIVAEHVWKDVKDPTTFT 182
               D R     + +V KV +  V    +     +P  ISL  I+++  W +    T   
Sbjct: 116 DGS-DMRATLSDIKAVRKVGDLAVEIETNGPFPILPDVISLTMIMSKK-WCEENQATKPV 173

Query: 183 N-----ENPV-----GTGPFTVIDTFTPQLYIQCRNPNYWDAANLEVDCLRVPQIANNDQ 232
           +     EN       GTGPF V +       +  RN  YW   +     +    IAN   
Sbjct: 174 DRRKGIENTASFKANGTGPFRVRERQPNVRTVFTRNGTYWGKIDGNAQEVIFTPIANPAT 233

Query: 233 LLGKIVNSELDWTSSF-VPDIDRTYAAAN------PNHHYWYPAAGTQAFMVNFKNPDPA 285
            +  +V+ E+D      V DI R  AA N      P     +     +   + + N    
Sbjct: 234 RVAALVSGEVDVMEPVPVQDIARINAAPNARVITGPEMRTIFLGMDQKRDELQYSN--VK 291

Query: 286 KKEALDNVDFRRAFSMALDRQTIIDIAFYGSGTVNDFASGLGYAFEAWSDEATHKKYKGF 345
            K    +   R+AF  A+D   I      G+        G G     W+ E   +     
Sbjct: 292 GKNPFKDKRVRQAFYQAIDIAGIQRTVMRGASRPTALLVGPG--INGWTAEQDKRL---- 345

Query: 346 NTYDVEGSKKLLAKAGFKDVNGDGFVETPSGKSFELLIQSPNG-WTDFNNTVQLAVEQLQ 404
             YDVE +KKLL +AG+           P+G  FE+ +  PN  + +     Q     L 
Sbjct: 346 -PYDVEAAKKLLTEAGY-----------PNG--FEVSLNCPNDRYVNDGQICQSVASNLA 391

Query: 405 EVGIKAKARTPEFAVYNQAMLEGTYDVAYTNYFHGADPFTYWNSGYNSALQS---GDGMP 461
           ++G+K          Y   +L    D ++  Y  G  P TY +    S+L S     G  
Sbjct: 392 KIGVKINLVAETKGTYFPKVLR--RDTSF--YMLGWTPTTYDSHNALSSLTSCPDDKGTG 447

Query: 462 RFAMHYFTDKKLDGLLDSFYKTADKNEQLAIAHGIQKIIAENQVTIPV--MSGAW 514
           +F +  + + KLD L        DK+++  +     KI A++   +P+   S AW
Sbjct: 448 QFNLGAYCNPKLDELTKKIQSEGDKDKRNEMIKEAFKIHADDVGHLPLHQQSLAW 502