Pairwise Alignments

Query, 556 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 530 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score = 95.9 bits (237), Expect = 3e-24
 Identities = 119/513 (23%), Positives = 209/513 (40%), Gaps = 55/513 (10%)

Query: 6   KKTALAAAVIAAATSVSAPAFARSELTIVPDFYPTMVRNFNPYLATNLRTTTDFIYEPLV 65
           ++ A+AA  + AA +V+A       LT + +  P  +         N       +   L 
Sbjct: 12  RQAAVAAIAVLAAWTVAAQPRQGGTLTWLVNPVPASIVPLTTTAGGNAEIGPKIVEGLLT 71

Query: 66  VFNEMKGNTPVFRLAESYKMADDLMSVTFDIRKGVKWSDGEAFTADDVVYSFGLLKAKPE 125
              ++K   P   LA ++  + D +  TF++RKGVKW DG+ FT+ DV +S   LK +  
Sbjct: 72  YDYDLK---PKPLLATAWSQSKDGLQYTFELRKGVKWHDGKDFTSADVAFSILTLK-QVH 127

Query: 126 LDQRGINKWVTSVEKVDEYKVRFRLSEANSNVPYEISLI-----PIVAEHVWKDVKDPTT 180
              RG    V  V+  D       LS+ +   P+ ++ +     PIV +H+++     + 
Sbjct: 128 PRGRGTFANVVDVKTPDANTAVIVLSKPS---PFLLTALASTESPIVPKHLYEGTDIASN 184

Query: 181 FTNENPVGTGPFTVIDTFTPQLYIQCRNPNYWDAANLEVDCLRVPQIANNDQLLGKIVNS 240
             N  PVGTGPF   +       I  RNPNYWD     +D + V  + ++      + + 
Sbjct: 185 KYNSAPVGTGPFVFKEWVQGSHIILERNPNYWDKPKPYLDRVVVRFVLDSAARAAALESG 244

Query: 241 ELDWTSSF----VPDIDR--TYAAANPNHHYWYPAAGTQAFMVNFKNPDPAKKEALDNVD 294
             D  +      + D++R         +          Q    N   P      AL  ++
Sbjct: 245 AADLANGTGGIPLSDVERFGKLPGVQIDTRISPYLGSHQQIYFNLDTP------ALQKLE 298

Query: 295 FRRAFSMALDRQTIIDIAFYGSGTVNDFASGLGYAFEAWSDEATHKKYKGFNTYDVEGSK 354
            RRA + A+D        +YG GT++  AS +G     + D A+ + Y  FN  + E + 
Sbjct: 299 VRRAIAQAIDVNAFAKTVWYGYGTLS--ASPIGKGISRYHD-ASIQPYP-FNPKEAEAA- 353

Query: 355 KLLAKAGFKDVNGDGFVETPSGKSFEL-LIQSPNGWTDFNNTVQLAVEQLQEVGIKAKAR 413
             L  AGFK   G        G   +L ++ +P              + L  +GI A   
Sbjct: 354 --LDAAGFKRGAG--------GTRLKLRVLYNP---FQERRAADFVRQSLGRIGIDATVE 400

Query: 414 TPEFAVY-NQAMLEGTYDVAYTNYFHGADPF-----TYWNSGYNSALQSGDGMPRFAMHY 467
           + +FA Y  +A  +  +D+   +  +  DP       +W+  +        G+P     +
Sbjct: 401 SYDFATYVTKAYTDRAFDITLESLTNLFDPTVGVQRVFWSKNFKV------GLPFSNAAH 454

Query: 468 FTDKKLDGLLDSFYKTADKNEQLAIAHGIQKII 500
           + + ++D LL++     D+ ++  +    Q I+
Sbjct: 455 YVNPEVDRLLEAAAVEVDEGKRRQLFVDFQNIV 487