Pairwise Alignments

Query, 556 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 549 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  106 bits (264), Expect = 3e-27
 Identities = 133/530 (25%), Positives = 216/530 (40%), Gaps = 62/530 (11%)

Query: 10  LAAAVIAAATSVSAPAFARSELT-IVPDFYPTMVRNFNPYLATNLRTTT--DFIYEPLVV 66
           LAA  +A+A S +A A A ++     PD   T++    P     L  +    F+  P  V
Sbjct: 24  LAAPSLASAASAAAAAAAPADAPRYTPDSVVTLLTALEPPTLVGLVNSAAGTFLVSPKTV 83

Query: 67  FNEMKGN---TPVFRLAESYKMADDLMSVTFDIRKGVKWSDGEAFTADDVVYSFGLLKAK 123
              +  +    P  +LA ++++  D +  TF +R+GVKW DG  F++ DV +S   LKA 
Sbjct: 84  EGLLSYDFDLRPRPQLAVAWEVQPDGLQYTFRLRRGVKWHDGRDFSSADVAFSILALKAS 143

Query: 124 PELDQRGINKWVTSVEKVDEYKVRFRLSEANSNVPYEISLI-----PIVAEHVWKDVKDP 178
                R     V+ V   D +     LS+     P+ ++ +     PIV  HV++     
Sbjct: 144 HPRG-RATFASVSEVRTPDAHTAVLVLSKP---APFLLTALAAAESPIVPRHVYEGKDLA 199

Query: 179 TTFTNENPVGTGPFTVIDTFTPQLYIQCRNPNYWDAANLEVDCLRVPQIANNDQLLGKIV 238
           +   N+ P+GTGPF   +       I  RNPNYWD     +D L V  I +       + 
Sbjct: 200 SHPANQAPIGTGPFVFKEWVRGSHVIYERNPNYWDPGKPYIDRLVVRFIPDQAAAAAALE 259

Query: 239 NSELDWTSSF---VPDIDRTYAAANPNHHYWYPAAGTQAFMVNFKNPDPAKKEALDNVDF 295
           +  +D   +    +PD+DR         H      G +     F N     +  LDN  F
Sbjct: 260 SGTVDLAGATPVPIPDLDRLKDVP----HLSLDTRGNE----YFNNSTTRIEFNLDNRYF 311

Query: 296 -----RRAFSMALDRQTIIDIAFYGSGTVNDFASG-LGYAFEAWSDEATHKKYKGFNTYD 349
                R+A + A+DR  I+   +YG GT    A G +    +A+ D            +D
Sbjct: 312 RHAKVRQAVAHAIDRDVILKTVWYGYGTA---APGPISPVLKAFHDPKV-----AVPRFD 363

Query: 350 VEGSKKLLAKAGFKDVNGDGFVETPSGKSFELLIQSPNGWTDFNNTVQLAVEQLQEVGIK 409
            + ++ LL +AGF     DG     S   F+            N   Q   + L  VGI 
Sbjct: 364 RKRAEALLDEAGFPR-GADGVRFRVSHDVFD---------GGGNRVGQYIRQALARVGID 413

Query: 410 AKARTPEFAVY-NQAMLEGTYDVAYTNYFHGADPFT-----YWNSGYNSALQSGDGMPRF 463
              RT EF  Y  +   +  +D          DP       YW+  +   +   +G    
Sbjct: 414 VTVRTQEFGAYIKRVYTDRDFDFNNQGMSQMFDPTVGIQRFYWSKNFRPGVPFSNGA--- 470

Query: 464 AMHYFTDKKLDGLLDSFYKTADKNEQLAIAHGIQKIIAENQVTIPVMSGA 513
              ++ + ++D LL++     D  ++ A+    Q++IA +  TI +++ A
Sbjct: 471 ---HYDNPEVDRLLEAAAVENDAAKRRALFGEFQRVIATDLPTIGLVAVA 517