Pairwise Alignments

Query, 556 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 542 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score = 99.8 bits (247), Expect = 2e-25
 Identities = 112/464 (24%), Positives = 191/464 (41%), Gaps = 66/464 (14%)

Query: 74  TPVFRLAESYKMADDLMSVTFDIRKGVKWSDGEAFTADDVVYSFGLLKAKPELDQRGINK 133
           +P  +LA ++ ++ D +  TF +R+GV+W DG+ FT+ DV +S GLLK      +   + 
Sbjct: 87  SPQPQLATAWTVSADGLQYTFTLRRGVRWHDGKPFTSADVAHSIGLLKQYHPRGRATFSS 146

Query: 134 WVTSVEKVDEYKVRFRLSEANSNVPYEISLI-----PIVAEHVWKDVKDPTTFTNENPVG 188
            V  V   D Y     LS+    VPY ++ +     PIV  H+++  K      N  P+G
Sbjct: 147 -VAEVRTPDAYTAVLVLSKP---VPYLLTALSASESPIVPRHLYESGKADANPANNAPIG 202

Query: 189 TGPFTVIDTFTPQLYIQCRNPNYWDAANLEVDCLRVPQIANNDQLLGKIVNSELDWT-SS 247
           TGPF   +          RNP+YWD     VD L V  I +       I   E+  +  +
Sbjct: 203 TGPFVFKEWVRGSHVTYERNPDYWDNPKPYVDRLIVRFIPDAAARAAAIEKGEVHLSPGT 262

Query: 248 FVP--DIDRTYAAAN----PNHHYWYPAAGTQAFMVNFKNPDPAKKEALDNVDFRRAFSM 301
            VP  D++R  A  N    PN + +        F  N +NP      AL ++  R+A + 
Sbjct: 263 PVPLGDVERLRAKPNLVFEPNGYQYINNVSRVEF--NLENP------ALQDLRVRQAIAH 314

Query: 302 ALDRQTIIDIAFYGSGTVNDFASGLGYAFEAWSDEATHKKYKGFNT-------YDVEGSK 354
           A++RQ +    +YG G +                   H   + F         +DV+ ++
Sbjct: 315 AINRQVVQKTVWYGQGQL--------------IPGPVHPALRKFYVPDLPVLPHDVKRAE 360

Query: 355 KLLAKAGFKDVNGDGFVETPSGKSFEL-LIQSPNGWTDFNNTVQLAVEQLQEVGIKAKAR 413
            LL  A        GFV   +G +  L L   P        T +   + L  +GI+    
Sbjct: 361 ALLDAA--------GFVRGKAGGNLRLKLAVVPISNEGGQRTAEYLKQSLGRIGIEVTIH 412

Query: 414 TPEFAVY-NQAMLEGTYDVAYTNYFHGADPFT-----YWNSGYNSALQSGDGMPRFAMHY 467
           + +FA Y  +   +  +D+  +   +  DP       YW+  +   L   +G        
Sbjct: 413 SQDFATYVRRVYADRAFDLHVSVMSNTFDPTVGIQRLYWSKNFKKGLPFSNGSG------ 466

Query: 468 FTDKKLDGLLDSFYKTADKNEQLAIAHGIQKIIAENQVTIPVMS 511
           +++ ++D LL++     D+  +       Q+ I  +   I +++
Sbjct: 467 YSNPEVDRLLEAAAVEIDEGRRRQAFAEFQRHIVRDLPDITLLA 510