Pairwise Alignments

Query, 556 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 497 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score = 90.5 bits (223), Expect = 1e-22
 Identities = 121/473 (25%), Positives = 199/473 (42%), Gaps = 72/473 (15%)

Query: 5   IKKTALAAAVIAAATSVSAPAFARSE-----LTIVPDFYPTMVRNFNPYLATNLRTTTDF 59
           +K+  L A   AA T ++ P  A ++     L I     PT +       A         
Sbjct: 2   LKRRTLLATGAAALTPLALPTIALAQRKKDALVIGLTLEPTGLDPTAKAGAEIAEVVLYT 61

Query: 60  IYEPLVVFNEMKGNTPVFRLAESYKMADDLMSVTFDIRKGVKWSDGEAFTADDVVYSFGL 119
           ++E L   N   G TP+  LAES++++ DL + TF +R+GVK+ +GE F A  V +SF  
Sbjct: 62  VFETLTKINSDGGVTPL--LAESWEVSPDLKTYTFKLRRGVKFQNGEPFNAQSVKFSFDR 119

Query: 120 LKA--KPELDQRGINKWVTSVEKVDEYKVRFRLSEANSNVPYEISLIPIVAEHVWKDVKD 177
             A      D+R      T V  VDE+ V       N  +  ++  +   A  +  + K 
Sbjct: 120 AAAANSTNKDKRTFTNIATQV--VDEHTVVL----INKEIEPDLLFLLGQASAILVEPKS 173

Query: 178 PTTFTNENPVGTGPFTVIDTFTPQLYIQCRNPNYWDAANLEVDCLRVPQIANNDQLLGKI 237
             T   + PVGTGP+ + +       +  +   +  A  +++       I+        +
Sbjct: 174 VETNATK-PVGTGPYRLDNWAKGSSIVLAKWDGWRGADTVQIRKATFRFISEPAAQTAAL 232

Query: 238 VNSELDWTSSFVPDIDRTYAAANPNHHY---WYPAAGTQAFMVNFKNPDPAKKEALDNVD 294
           +++++D        + R+ +    +  +   +  + G     +N       K++ LD+V 
Sbjct: 233 LSNDIDLFPH--ASVSRSLSQFQNDKRFQIVFNASLGKTILAIN------NKRKPLDDVR 284

Query: 295 FRRAFSMALDRQTIIDIAFYGSGTV--NDFASGL-GYAFEAWSDEATHKKYKGFNTYDVE 351
            RRA S A+DR+ +ID A  G G    + +  GL GY               G N Y++E
Sbjct: 285 VRRAISAAIDRKAVIDAAVDGRGVPIGSHYVPGLPGYV-----------DTTGVNPYNIE 333

Query: 352 GSKKLLAKAGFKDVNGDGFVETPSGKSFELLIQSPNGWTDFNNTVQLAVEQLQEVGIKAK 411
            +KKLLA+AG         V+TP     EL++  P          +L   QL ++GI AK
Sbjct: 334 KAKKLLAEAG---------VKTP--LELELVLPPP---PYARQGGELIAAQLAKIGIVAK 379

Query: 412 ARTPEFAVYNQAMLEGT-----YDVAYTNYFHGAD------PFTYWNSGYNSA 453
            +  E+A +    + GT     YD++   +    D      P  YW  GY SA
Sbjct: 380 IQNVEWAQW----ISGTYGNKNYDLSLILHVEPFDLVNYTKPEYYW--GYQSA 426