Pairwise Alignments

Query, 556 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 495 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score = 89.0 bits (219), Expect = 4e-22
 Identities = 121/503 (24%), Positives = 208/503 (41%), Gaps = 71/503 (14%)

Query: 11  AAAVIAAATSVSAPAFARSELTIV------PDFYPTMVRNFNPYLATNLRTTTDFIYEPL 64
           A A +A AT ++  A  R +  ++      P   PT     +   A         I E L
Sbjct: 11  AGATVALATPLAGMAQGRKDAIVIGMALEPPGLDPT-----SGAAAAIAEVVQYNILETL 65

Query: 65  VVFNEMKGNTPVFRLAESYKMADDLMSVTFDIRKGVKWSDGEAFTADDVVYSFGLLKAKP 124
              N     TP+  LA+S++++ DL + TF +++GVK+ +GE F A  V +SF    ++ 
Sbjct: 66  TKINADGSVTPL--LADSWEVSPDLKTYTFKLKRGVKYQNGEPFNAAAVKFSFDRAGSEK 123

Query: 125 ELDQRGINKWVTSVEKVDEYKVRFRLSEANSNVPYEISLIPIVAEHVWKDVKDPTTFTNE 184
             ++        S + VD+Y V     E + ++P+ +     V     K  +   T    
Sbjct: 124 STNKDKRTFANLSTQVVDDYTVVVINKEIDPDLPFVLGQATAVIVEP-KSAEGNAT---- 178

Query: 185 NPVGTGPFTVIDTFTPQLYIQCRNPNYWDAANLEVDCLRVPQIANNDQLLGKIVNSELDW 244
            PVGTGP+ + +          +   +   A  +++ +    I++       +++ ++D 
Sbjct: 179 KPVGTGPYKLDNWAKGSSITLSKWEGFRSPATAKINKVTFRFISDTAAQAAAVLSGDID- 237

Query: 245 TSSFVPDI-DRTYAAANPNHHYWYPAAGTQAFMVNFKNPDPAKKEALDNVDFRRAFSMAL 303
                P I  R       N  +    AG++A  +   N    +K+ LD+V  RRA   A+
Sbjct: 238 ---VFPRIGTRVVPQFKMNPQFQVILAGSRAKTILSIN---NRKKPLDDVRVRRAILAAI 291

Query: 304 DRQTIIDIAFYGSGTVNDFASGLGYAFEAWSDEATHKKYKGFNTYDVEGSKKLLAKAGFK 363
           DR+ +I+      G  + F   +G  +   +  A +    G N +D+E +KKLLA+AG  
Sbjct: 292 DRKAVIE------GAADGFGVPIGSHYVPGA--AGYVDTTGINPFDIEKAKKLLAEAG-- 341

Query: 364 DVNGDGFVETPSGKSFELLIQSPNGWTDFNNTVQLAVEQLQEVGIKAKARTPEFAVYNQA 423
                  V+TP     EL +  P          ++ V +L ++GI  K +  E+A +   
Sbjct: 342 -------VKTP----LELKMTLPPP-PYARQGGEVIVAELAKIGIVVKVQNVEWAQW--- 386

Query: 424 MLEGT-----YDVAYTNYFHGADPFTYWNSGYNSALQSGDGMPRFAMHYFTDKKLDGLLD 478
            L GT     YD++  ++    D   Y  S Y    QS              K  D L D
Sbjct: 387 -LSGTYGNKDYDLSIVSHVEPFDLGNYAKSDYYWGYQS--------------KAFDTLFD 431

Query: 479 SFYKTADKNEQLAIAHGIQKIIA 501
               TA+  E+  +    QK++A
Sbjct: 432 KIKTTANTAERNKLLGDAQKMLA 454