Pairwise Alignments

Query, 556 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 521 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  100 bits (248), Expect = 2e-25
 Identities = 126/529 (23%), Positives = 209/529 (39%), Gaps = 76/529 (14%)

Query: 10  LAAAVIAAATSVSAPAFARSELTIVPDFYPTMVRNFNPYLATNLRTTTDFIYEPLVVFNE 69
           +AAA++A   S SA   +          +   V + +P L  +    +  ++    + N 
Sbjct: 8   VAAALLATGVSASAQTLSIG--------FADPVSSVDPELNNHAGDRSLALHFWDSIINS 59

Query: 70  MKGNTPVFRLAESYKMADDLMSVTFDIRKGVKWSDGEAFTADDVVYSFGLLKAKPE--LD 127
             G      LA S+K  DD  +  F +R  +KW DG  F+ADD+V+SF   +  P     
Sbjct: 60  RDGGKLEPALASSWKALDD-KTWEFKLRTDIKWQDGTPFSADDIVFSFQRSRNVPGSVAS 118

Query: 128 QRGINKWVTSVEKVDEYKVRFRLSEANSNVPYEISLIPIVAEHVWKDVKDPTTFTNENPV 187
             G  + V SV   D   +  + +  N  +P EI+ I IV++HV +  K          V
Sbjct: 119 YSGALRTVESVTAKDPATLIVKTNTPNPMLPLEIASIYIVSKHVGEKSKTEDYNAGRAVV 178

Query: 188 GTGPFTVIDTFTPQLYIQCRNPNY------WDAANLEVDCLRVPQIANNDQLLGKIVNSE 241
           GTGP+  +        +  RNP Y      W+  N          I N       ++  +
Sbjct: 179 GTGPYKFVSYVPGDRTVFERNPGYYGPKPLWEKVNYRF-------INNGAARTAALLAGD 231

Query: 242 LDWTSSF-VPDIDRTYAAANPNHHYWYPAAGTQAFMVNFK-NPD---------PAKKEAL 290
           +D      V D+++       +  Y YP          FK  P+         P +K  L
Sbjct: 232 VDVIDKVAVTDVEKLRKDPKVS-VYTYPGLRVLLLQPTFKAGPNEFITDNAGKPLEKNPL 290

Query: 291 DNVDFRRAFSMALDRQTIIDIAFYGSGTVNDFASGLGYAFEAWSDEATHKKYKGFN---- 346
            +V  R+A S+A++R+ I+D    G+ T              W  + +     G+N    
Sbjct: 291 LDVRVRQALSLAINRKAIVDRVLQGTVT----------EANQWMPKGSF----GYNPDVK 336

Query: 347 --TYDVEGSKKLLAKAGFKDVNGDGFVETPSGKSFELLIQSP-NGWTDFNNTVQLAVEQL 403
              Y+ E +KKLLA+AGF           P G  F++ I  P + +     TVQ   +  
Sbjct: 337 DIAYNAEQAKKLLAEAGF-----------PQG--FQIAIHVPGDRYPQAPETVQAVAQFW 383

Query: 404 QEVGIKAKARTPEFAVYNQAMLEGTYDVAYTNYFHGADPFTYWNSGYNSALQSGD---GM 460
             +G+K K     +AVY+    +  Y V+   + +G     Y   G    L + D   G 
Sbjct: 384 SRIGVKTKVEVVPWAVYSGRANKNEYAVSVIAWGNGTGEAGY---GLLQTLTTPDAKRGR 440

Query: 461 PRFAMHYFTDKKLDGLLDSFYKTADKNEQLAIAHGIQKIIAENQVTIPV 509
                  ++++ +D  LD+     D   + AI     K++ ++   IP+
Sbjct: 441 GSNNWGRYSNESVDKALDAATVEFDAKRREAIFRHAAKLVTDDVGQIPL 489