Pairwise Alignments

Query, 556 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 609 a.a., Peptide ABC transporter, periplamic peptide-binding protein from Pseudomonas putida KT2440

 Score = 85.9 bits (211), Expect = 4e-21
 Identities = 118/511 (23%), Positives = 209/511 (40%), Gaps = 57/511 (11%)

Query: 39  PTMVRNFNPYLATNLRTTTDFIYEPLVVFN---EMKGNTPVFR---LAESYKMADDLMSV 92
           P    NF  Y  + L        EPL+V     +  G+ P      +A S + ++D   V
Sbjct: 76  PITTPNFQQYGISELN-------EPLMVGTGQYDPSGDEPTSSYGLIARSVEYSEDRSWV 128

Query: 93  TFDIRKGVKWSDGEAFTADDVVYSFGLLKAKPELDQRGINKWVTSVEKVDEYKVRFRLSE 152
            F++R   +W DG+  T+ DV +S+  L        R   + V  V+ +   ++RF    
Sbjct: 129 VFNLRPEARWHDGQPITSADVAFSYRTLLKDGHPIYRTNLQEVQRVDILGPLRIRFVFKR 188

Query: 153 A-NSNVPYEISLIPIVAEHVWKDVKDPTTFTNENPVGTGPFTVIDTFTPQLYIQCRNPNY 211
           A N  +   +  +P++ +H W+  +D    T E P+G+GP+ +      +  +  R  NY
Sbjct: 189 AGNPLLILRLGEMPVLPKHYWQK-RDFKATTFEPPLGSGPYRITQVQPGRRLVFERVKNY 247

Query: 212 W--DAA---------NLEVDCLRVPQIANNDQLLGK----IVNSELDWTSSFVPDIDRTY 256
           W  D A          +E +  R   +A      G+    I +   +W + +     R  
Sbjct: 248 WGKDLAVNRGKYNFNRVEYEFYRDATVAFEAFKAGEFDIYIEHQAKNWANGYNFPAVRRG 307

Query: 257 AAANPNHHYWYPAAGTQAFMVNFKN---PDPAKKEALD-NVDF----RRAFSMALDRQTI 308
                   +  P   TQ   +N +     DP  ++AL   +DF    R  FS A  R T 
Sbjct: 308 EVIKAQIPHSIPTQ-TQGLFMNSRRAAFSDPRVRQALGLMLDFEWTNRALFSSAYRRSTS 366

Query: 309 I--DIAFYGSG--------TVNDFASGLGYAFEAWSDEATHKKYKGFNTYDVEGSKKLLA 358
              +  F  SG         +  F   L     +   + +H   +G +   +  +  LLA
Sbjct: 367 YYPNSEFAASGLPTGKEWLLLAPFRDQLPAKLFSEPYKVSHTDGRGISRQTLRQALGLLA 426

Query: 359 KAGFKDVNGDGFVETPSGK-SFELLIQSPNGWTDFNNTVQLAVEQLQEVGIKAKARTPEF 417
           +AG+K ++G   V++   +   ELL+ +PN        +Q  VE L  +GI A+ RT + 
Sbjct: 427 EAGWK-LHGQRLVDSKGQQLRMELLLVNPN----LERILQPYVENLSSIGIDARLRTVDR 481

Query: 418 AVYNQAMLEGTYDVAYTNYFHGADPFTYWNSGYNSALQSGDGMPRFAMHYFTDKKLDGLL 477
           A Y Q + +  +D+          P       ++S+  +  G   +A     D  +D LL
Sbjct: 482 AQYKQRLDQFDFDMILMTLNQTLSPGLEQWLYFHSSQAATKGSKNYA--GVKDPVVDHLL 539

Query: 478 DSFYKTADKNEQLAIAHGIQKIIAENQVTIP 508
           D+      +++Q+A A  + ++++ +   IP
Sbjct: 540 DTLLAARTRDDQVAAARALDRVLSWHYYMIP 570