Pairwise Alignments

Query, 556 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., dipeptide ABC transporter - periplasmic binding protein from Pseudomonas putida KT2440

 Score = 97.4 bits (241), Expect = 1e-24
 Identities = 138/552 (25%), Positives = 230/552 (41%), Gaps = 80/552 (14%)

Query: 7   KTALAAAVIAAATSVSAP-AFARSELTIVPDFYPTMVRNFNPYLATNLRTTTDFIYEPLV 65
           K A+   ++ A     AP A A S L    +  P     F+P   T   T TDF      
Sbjct: 3   KHAVIPFLLGAGLLSGAPSAVAASNLVFCSEGSPA---GFDPGQYT---TGTDFDASAET 56

Query: 66  VFNEM----KGNTPVFR-LAESYKMADDLMSVTFDIRKGVKW------SDGEAFTADDVV 114
           VFN +    +G T V   LA  ++++DD  + TF +R+GVK+           F ADDV+
Sbjct: 57  VFNRLTQFERGGTAVIPGLATKWEVSDDGKTYTFHLREGVKFHTTDYFKPSRPFNADDVL 116

Query: 115 YSFGLLKAK------------PELDQRGINKWVTSVEKVDEYKVRFRLSEANS----NVP 158
           ++F  +  K            P     G++K +  VEK+DE+ V+F L+E ++    N+ 
Sbjct: 117 FTFNRMLDKDNPFRKAYPTEFPYFTDMGMDKNIAKVEKLDEHTVKFTLNEVDAAFIQNLA 176

Query: 159 YEISLIPIV--AEHVWKDVKDPTTFTNENPVGTGPFTVIDTFTPQLYIQCR-NPNYWDAA 215
              + I     A+ + K+ K      N+ P+GTGPF V   +     I+ + N +YW   
Sbjct: 177 MSFASIQSAEYADQLLKNGK--AADINQKPIGTGPF-VFSKYQKDAQIRFKGNKDYWQPE 233

Query: 216 NLEVDCLRVPQIANNDQLLGKIVNSELDWTSSFVPDIDRTYAAANPNHHYWYPAA---GT 272
           ++++D L      +    + K+  +E   T  F    D     A+ N      A    G 
Sbjct: 234 DVKIDNLIFAITTDASVRMQKLKKNECQVT-LFPRPADIEPLKADKNLQMPQQAGFNLGY 292

Query: 273 QAFMVNFKNPDPAKKEALDNVDFRRAFSMALDRQTIIDIAFYGSG--TVNDFASGLGYAF 330
            A+ V  K     +   +  +  R+A  MA+D++ II+  + G+G   VN          
Sbjct: 293 IAYNVMDKIKGSNEANPMAQLKVRQALDMAVDKKKIIESVYQGAGQLAVNAMPP------ 346

Query: 331 EAWSDEATHKKYKGFNTYDVEGSKKLLAKAGFKDVNGDGFVETPSGKSFELLIQSPNGWT 390
             WS + + K       +D E +K+LL +AG K        E      + + +Q P    
Sbjct: 347 TQWSYDDSIKD----AAFDPEKAKQLLKEAGIK--------EGTEITLWAMPVQRP---- 390

Query: 391 DFNNTVQLAVEQLQ----EVGIKAKARTPEFAVYNQAMLEGTYDVAYTNYF-HGADPFTY 445
            +N   +L  E LQ    ++GIKAK  + E+  Y +    G        +     DP  +
Sbjct: 391 -YNPNAKLMAEMLQSDWAKIGIKAKIVSYEWGEYIKRSKGGEQGAMLIGWSGDNGDPDNW 449

Query: 446 WNSGYNSALQSGDGMPRFAMHYFTDKKLDGLLDSFYKTADKNEQLAIAHGIQKIIAENQV 505
             + Y      G+   ++       K  D L+     T+D+ ++  +    Q I+ E QV
Sbjct: 450 LGTLYGCDAVDGNNFSKWCY-----KPYDDLIKQAKATSDQAKRTELYQKAQHILKE-QV 503

Query: 506 TIPVMSGAWMYQ 517
            I  ++ + +YQ
Sbjct: 504 PITPIAHSTVYQ 515