Pairwise Alignments

Query, 556 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 618 a.a., ABC transporter, periplasmic substrate-binding protein from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 92.0 bits (227), Expect = 6e-23
 Identities = 123/528 (23%), Positives = 206/528 (39%), Gaps = 65/528 (12%)

Query: 30  ELTIVPDFYPTMVRNFNPYLATNLRTT--TDFIYEPLVVFNEMKGNTPVFRLAESYKMAD 87
           EL +V +   +    +NP+           D ++EPL++ +  +  +    LAE  ++A 
Sbjct: 61  ELRLVSNLRFSTFDKYNPFTLKGSPPAYLVDLLFEPLLLPSMDETASGYGLLAEDVQVAP 120

Query: 88  DLMSVTFDIRKGVKWSDGEAFTADDVVYSFGLLKAKPELDQ-RGINKWVTSVEKVDEYKV 146
           D +S TF +R   ++ DG    A DV +SF +L+      Q   + + V S E +D   V
Sbjct: 121 DRLSATFRLRPQARFHDGSPVQAADVKHSFDILRGPLVSPQYASLLQEVKSAEVLDGLTV 180

Query: 147 RFRLSEANSNVPYEISLIPIVAEHVWKD----VKDPTTFTNENPVGTGPFTVIDTFTPQL 202
           RFR +  N  +P  +  IP+ +   W +     K       + PVG+GP+ +      + 
Sbjct: 181 RFRFASPNRELPLTVGSIPVFSRR-WGEENGKAKPFDQIVTDTPVGSGPYKIGPVRFGRD 239

Query: 203 YIQCRNPNYWDAA------NLEVDCLRVPQIANNDQLLGKIVNSELDWTSSFVPD----- 251
               R+PNYW  A          D + V    +N   L  +   E D+ S +        
Sbjct: 240 ITYVRDPNYWGHALPARRGTANFDRITVKIYKDNTARLEALKAGEFDFMSFYSAGDWARR 299

Query: 252 -----IDRTYAAANPNHHYWYPAAGTQAFMVNFKNPDPAKKEALDNVDFRRAFSMALDRQ 306
                 DR     +   H     +G Q++ +N + P       L +V  R A  +A+D  
Sbjct: 300 VTGRRFDRGELIKHEFPHQL--PSGFQSYFLNTRRPQ------LADVRVREALGLAVDHD 351

Query: 307 TIIDIAFY-GSGTVNDF-------ASGLG-----YAFEAW----SDEATHKKYKGFNTY- 348
            +    FY G   V D        A GL         E W     D      Y+   T  
Sbjct: 352 WMNRQLFYNGYPRVRDLFGNTACEAKGLPSPGELALLEPWRGKVPDAVFGPMYEPPVTVG 411

Query: 349 -------DVEGSKKLLAKAGFKDVNGDGFVETPSGKSFEL-LIQSPNGWTDFNNTVQLAV 400
                  ++  ++ LLA+AG+     DG +    G+  EL  + S  G      T+   +
Sbjct: 412 EGQSLRNNLRRARDLLAEAGW--TYRDGALRNAQGQPLELTYLDSREGGI---RTLGPWI 466

Query: 401 EQLQEVGIKAKARTPEFAVYNQAMLEGTYDVAYTNYFHGADPFTYWNSGYNSALQSGDGM 460
           + LQ++GIK   R+ ++A+Y Q M    +D+   N     +P       + S   + +G 
Sbjct: 467 QNLQKLGIKLHFRSVDYALYQQRMDRYDFDIMTMNAPGTHNPGQELVDLFGSKAATTEGA 526

Query: 461 PRFAMHYFTDKKLDGLLDSFYKTADKNEQLAIAHGIQKIIAENQVTIP 508
             F+        +D LL        + E L   H + ++I  +   IP
Sbjct: 527 YNFS--GVRSPAVDALLRRVIGATSREELLPACHALDRVIMHSHYLIP 572