Pairwise Alignments

Query, 556 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 523 a.a., Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 87.4 bits (215), Expect = 1e-21
 Identities = 105/431 (24%), Positives = 177/431 (41%), Gaps = 54/431 (12%)

Query: 10  LAAAVIAAATSVSAPAFARSELTIVPDFYPTMVRNFNPYLATNLRTTTDFIYEPLVVFNE 69
           L AA+   A    A  F  +  + +P +    + + N  LA  +  +   +YE LV +N 
Sbjct: 8   LFAAMALGAGGAHAKTFKWTSASDIPTWD---IHSQNNALANGIHAS---VYESLVYYNS 61

Query: 70  MKGNTPVFRLAESYKMADDLMSVTFDIRKGVKWSDGEAFTADDVVYSFGLLKAKPELDQR 129
            K   P   LA ++K       +  ++R GVK+ DG AF+ADD V+S  + +A  +    
Sbjct: 62  -KTFKPEPVLATAWKQVTPTQ-LRMNLRTGVKFHDGSAFSADDAVFS--IERAMTKTSNF 117

Query: 130 GI-NKWVTSVEKVDEYKVRFRLSEANSNVPYEISLIPIVAEHVW---------KDVK-DP 178
           GI  + +  V KVD   +     + N  +  +++ + ++++  W         KD+K   
Sbjct: 118 GIYAQGIDRVVKVDANTIDIFTKDPNPVLLNQLTELRMMSK-AWAEKNNSTMPKDIKTQD 176

Query: 179 TTFTNENPVGTGPFTVIDTFTPQLYIQCRNPNYWDAANLEVDCLRVPQIANNDQLLGKIV 238
             F + N  GTGPF + +    Q  +  RNPN+W  +   V  +    +      +  ++
Sbjct: 177 ENFAHRNANGTGPFVLKEWQPDQKLVVTRNPNWWGKSEGNVTEVIYTPVKAVATRMAALL 236

Query: 239 NSELDWTSSFVP-DIDRTYAAAN-------PNHHYWYPAAGTQAFMVNFKNPDPAKKEAL 290
           + E+D      P D+ R     N        N   ++   G   F       +   K  L
Sbjct: 237 SGEVDLVLDPSPQDLARVRGEQNLKVIDGVENRTIFF---GMDQFRDELPGSNIKGKNPL 293

Query: 291 DNVDFRRAFSMALDRQTIIDIAFYGSGTVNDFASGLGYAFEAWSDEATHKKYKGFNTYDV 350
            +   R+A   A+D  TI  ++  G G      + +      W+ EA HK++     +DV
Sbjct: 294 KDQRVRKALYQAIDMNTIARVSLRGLG--QPTGALVAPQVNGWT-EAVHKRH----PFDV 346

Query: 351 EGSKKLLAKAGFKDVNGDGFVETPSGKSFELLIQSPNG-WTDFNNTVQLAVEQLQEVGIK 409
             ++KLLA AG+KD              FE+    PN  + +     Q        +G+K
Sbjct: 347 AAAQKLLADAGYKD-------------GFEVDFACPNNRYINDEQICQAVTAMWARIGVK 393

Query: 410 AKARTPEFAVY 420
           AK RT     Y
Sbjct: 394 AKLRTLPLVTY 404