Pairwise Alignments

Query, 556 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 562 a.a., ABC transporter substrate-binding protein from Serratia liquefaciens MT49

 Score = 97.8 bits (242), Expect = 1e-24
 Identities = 127/566 (22%), Positives = 237/566 (41%), Gaps = 71/566 (12%)

Query: 4   NIKKTALAAAVIAAATSVSAPAFARSELTIVPDFYPTMVRNFNPYLATNL--RTTTDFIY 61
           +++   LA  +  A+ +   PA A+     V         NFNPYL +N      TD I+
Sbjct: 30  SVQAETLAEGITPASDASLVPAAAKLRKDTVVAGILEPQGNFNPYLFSNGWDENVTDVIF 89

Query: 62  EPLVVFNEMKGNTPVFRLAESYKMADDLMSVTFDIRKGVKWSDGEAFTADDVVYSFGLLK 121
             L+  +      PV RLAES++++ D    T  +R  +  SDG    A+D+ ++  LL 
Sbjct: 90  TRLIGLDSQ--GKPVARLAESWQVSPDNRVYTIKLRPNLVNSDGSPIKAEDIAFTLTLLH 147

Query: 122 AKPELD----------------QRGINKWVTSVEKVDEYKVRFRLSEANSNVPYEISLIP 165
             P  D                + G    ++ ++ +D+  ++   ++  +     I    
Sbjct: 148 -DPAYDGETDITPAHIQGGAEYKNGTAPSISGLKVIDDRTLQITTTQPGATTLQLIGGPV 206

Query: 166 IVAEHVWKDVK----DPTTFTNENPVGTGPFTVIDTFTPQLYIQCR-NPNYWDAANLEVD 220
           +   +  K+ +    D     N  P+G GP+ + D + P   I+   NPN++        
Sbjct: 207 LSKAYYGKEYQRGKLDSVRELNGKPLGNGPY-IYDKYVPGQEIRFHANPNFYLGKPAVAR 265

Query: 221 CL-RVPQIANNDQLLGKIVNSELDWTSSFVPDIDRTYAAANPNHHYWYPAAGTQAFMVNF 279
            + RV   + N QL  +   ++ D  +S   DI++    +  N +  Y ++       NF
Sbjct: 266 FIYRVTNPSTNFQLF-QTGETDYDAFTSKPDDIEQLKLLSFANINL-YSSSDYSRVDFNF 323

Query: 280 KNPDPAKKEALDNVDFRRAFSMALDRQTIIDIAFYGSGTV-NDFASGLGYAFEAWSDEAT 338
           K P      AL +   R+A    LDRQ +I + + G G+V N   S + +A++       
Sbjct: 324 KRP------ALQDARVRQALIYGLDRQKLITVVYQGYGSVANQPISPVSWAYDP------ 371

Query: 339 HKKYKGFN--TYDVEGSKKLLAKAGFKDVNGDGFVETPSGKSFELLIQSPNGWTDFNNTV 396
               KG N   YDV  +K+LL +AG+K    DG +    GK  EL +       + +  V
Sbjct: 372 ----KGINPYAYDVNKAKQLLDQAGWKP-GADG-IRQKDGKKLELTLLVTKKLIN-DALV 424

Query: 397 QLAVEQLQEVGIKAKARTPEFAVYNQAMLEGTYDVAYTNYFHGADPFTYWNSGYNSALQS 456
            +A +  +++G+  K +  +F         G YD+A  +     DP        +   ++
Sbjct: 425 PIAKDNYRQIGVLLKPQVLDFNALLAQRKAGNYDLASLSTSGLNDPHDGVRDFISQVSET 484

Query: 457 GDGMPRFAMHYFTDKKLDGLLDSFYKTADKNEQLAIAHGIQKIIAENQVTIPVMSGAWMY 516
           G          +++ ++D L+     T D  ++  + H + +++AE+   I ++    + 
Sbjct: 485 G----------YSNPQVDKLIGEANATLDIEQRKPLYHHLYQVLAEDPPVI-LLGNRKVL 533

Query: 517 QYNTTRFTGWWSEENPKGRPSVWAGI 542
             ++ R TG+        +P V+ G+
Sbjct: 534 SASSARVTGF--------KPDVYNGL 551