Pairwise Alignments

Query, 556 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 526 a.a., Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 85.1 bits (209), Expect = 6e-21
 Identities = 127/524 (24%), Positives = 207/524 (39%), Gaps = 106/524 (20%)

Query: 45  FNPYLATNLRTTTDF----IYEPLVVFNEMKGNTPVFR-LAESYKMADDLMSVTFDIRKG 99
           FNP L T+  TT D     IY  LV F    G T V   LAE + +++D  + TF +RKG
Sbjct: 33  FNPQLFTS-GTTYDASSVPIYNRLVEFKT--GTTEVIPGLAEKWDISEDGKTYTFHLRKG 89

Query: 100 VKWSDGEAF------TADDVVYSFGLLKAKPE------------LDQRGINKWVTSVEKV 141
           VKW   + F       ADDVV+SF   K +               +  G+   ++ V+KV
Sbjct: 90  VKWQSSKDFKPTRELNADDVVFSFDRQKNEQNPYHKVSGGSYEYFEGMGLPDLISEVKKV 149

Query: 142 DEYKVRFRLSEANSNVPYEISLIPIVAEHVWKDVKD------PTTFTNENPVGTGPFTVI 195
           D++ V+F L+   +  P+   L    A  + K+  D           + NPVGTGPF ++
Sbjct: 150 DDHTVQFVLTRPEA--PFLADLAMDFASILSKEYADNMLKAGTPEKVDLNPVGTGPFQLV 207

Query: 196 DTFTPQLYIQCRNPNYWDAANLEVDCLRVPQIANNDQLLGKIVNSELDWTSSFVPDIDRT 255
                   +      YW            PQI   D+L+            S  PD    
Sbjct: 208 QYQKDSRILYKAFDGYWGTK---------PQI---DRLV-----------FSITPDASVR 244

Query: 256 YAAANPNHHYW--YPAAGTQAFMVNFKNPD--------------PAKKEALDNVDFRRAF 299
           YA    N      YP     A M   KN +                +K+ LD+V  R+A 
Sbjct: 245 YAKLQKNECQVMPYPNPADIARMKEDKNINLMEQAGLNVGYLSYNVQKKPLDDVKVRQAL 304

Query: 300 SMALDRQTIIDIAFYGSGTVNDFASGLGYAFEAWSDEATHKKYKGFNTYDVEGSKKLLAK 359
           + A++++ II   + G+G     A  L      W      K Y     YD E +K LL +
Sbjct: 305 TYAVNKEAIIKAVYQGAGVA---AKNL-IPPTMWGYNDDIKDY----GYDPEKAKALLKE 356

Query: 360 AGFKDVNGDGFVETPSGKSFELLIQSPNGWTDFNNTVQLAVEQLQ----EVGIKAKARTP 415
           AG +             K F + + +      +N   +   E +Q    ++G++AK  T 
Sbjct: 357 AGLE-------------KGFTIDLWAMPVQRPYNPNARRMAEMIQADWAKIGVQAKIVTY 403

Query: 416 EFAVYNQAMLEGTYDVAYTNYF-HGADPFTYWNSGYN-SALQSGDGMPRFAMHYFTDKKL 473
           E+  Y +   +G +      +     DP  ++ + ++  A Q G    ++    F D   
Sbjct: 404 EWGEYLKRAKDGEHQTVMMGWTGDNGDPDNFFATLFSCDAAQQGSNYSKWCYKPFED--- 460

Query: 474 DGLLDSFYKTADKNEQLAIAHGIQKIIAENQVTIPVMSGAWMYQ 517
             L+     T D N+++ +    Q ++  +Q    +++ + +Y+
Sbjct: 461 --LIQPARATDDHNKRIELYKQAQ-VVMHDQAPALIIAHSTVYE 501