Pairwise Alignments

Query, 556 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 515 a.a., DNA-binding protein from Fusobacterium nucleatum SB010

 Score = 82.0 bits (201), Expect = 5e-20
 Identities = 100/394 (25%), Positives = 171/394 (43%), Gaps = 51/394 (12%)

Query: 58  DFIYEPLVVFNEMKGNTPVFRLAESYKMADDLMSVTFDIRKGVKWSDGEAFTADDVVYSF 117
           + IY+ L+  +E   N  +  LA+ ++++ D  + TF +  G KW DG+  TA+DV ++ 
Sbjct: 65  ELIYDSLLEKDE---NGLIPWLAKEWEVSKDGKTFTFTLVDGAKWHDGKDLTAEDVAFTV 121

Query: 118 GLLKAKPELDQRGI---NKWVTSVEKVDEYKVRFRLSEANSNVPYEISLIPIVAEHVWKD 174
              K  P + + G+    +++     VD  KV     +       +I  + I+ +H+W+ 
Sbjct: 122 EYFKKHPPV-RGGLMLNGEYLMDSVSVDGNKVIIHTVDYTPVALEKIGSMRIIPKHIWEK 180

Query: 175 VKDPTTFTNENP-VGTGPFTVIDTFTPQ-LYIQCRNPNYWDAANLEVDCLRVPQIANNDQ 232
           V DP  F+ E   VG+GP+ ++   + Q  Y   +N  +W    LE     +  I  +D 
Sbjct: 181 VDDPEKFSGEGDIVGSGPYKLVAYNSEQGSYKMEKNNEFW---GLEPAATAIEWIPVSDS 237

Query: 233 LLGKIVNSELDWTSSFVPDIDRTYAAANPNHHYWYPAAGTQAFMVNFKNPDPAKKEALDN 292
           +L    N E+D T   V  +D      N          G   + + F N D  K  AL +
Sbjct: 238 VLA-FQNGEIDIT---VVPVDLLKNFENNKEFKIVKNFGLHNYRLYF-NFD--KVPALKD 290

Query: 293 VDFRRAFSMALDRQTIIDIAFYGSGTVNDFASGLGYAFEAWSDEATHKKYK---GFNTYD 349
            D R+A + A+DR+ +ID    GSG         GY        +TH  Y       +Y+
Sbjct: 291 KDIRQAIAYAIDRKELIDKLERGSG----LEGSQGYL------PSTHPMYNKNIPSYSYN 340

Query: 350 VEGSKKLLAKAGFKDVNGDGFVETPSGKSFELLIQSPNGWTDFNNTVQLAVEQLQEVGIK 409
           VE +K+L+                  GK+FE+ +   N   +     +L   +L+E+GI 
Sbjct: 341 VEKAKELM-----------------KGKTFEVELLVGNSPKEV-KMAELIKIRLEEIGIS 382

Query: 410 AKARTPEFAVYNQAMLEGTYDVA-YTNYFHGADP 442
            K  + +    +  + +  Y +A   +   GADP
Sbjct: 383 VKVVSIDAKARDSKVRDKDYQMAIMKSGGMGADP 416