Pairwise Alignments

Query, 556 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 529 a.a., ABC-type dipeptide transport system, periplasmic component from Enterobacter asburiae PDN3

 Score = 92.8 bits (229), Expect = 3e-23
 Identities = 131/506 (25%), Positives = 211/506 (41%), Gaps = 55/506 (10%)

Query: 16  AAATSVSAPAFARSELTIVPDFYPTMVRNFNPYLATNLRTTT--DFIYEPLVVFNEMKGN 73
           AAA    AP    S +  +    P  V   NP  A++  T T    +Y PL  FN   GN
Sbjct: 31  AAAAKNDAPKEGGSLIIGITSGDPLAV---NPLYASDRTTLTIMQALYAPLYSFNN--GN 85

Query: 74  TPVFRLAESYKMADDLMSVTFDIRKGVKWSDGEAFTADDVVYSFG-LLKAKPELDQRGIN 132
              + LAES   + D +S T  ++  +KW DG+  TADDVV++F  LL AK     R + 
Sbjct: 86  IE-WGLAESLTPSADNLSYTLTLKPNLKWQDGQPLTADDVVFTFNKLLDAKQHSFFRSMF 144

Query: 133 KW---VTSVEKVDEYKVRFRLSEANSNVPYEISLIPIVAEHVWKDVKD-PTTFTNENPVG 188
            +      V KVD+  V+F L + ++     +  I  + +HV+    D   +  N+ PVG
Sbjct: 145 TYGDKPVQVSKVDDRTVKFTLPQVSAAFTGTLVQIYPIPQHVFAGEGDLEKSSKNDAPVG 204

Query: 189 TGPFTVIDTFTPQLYIQCRNPNYWDA-ANLEVDCLRVPQIANNDQLLGKIVNSELDWTSS 247
           +GPF   +    Q Y   R  +YW+  A L+    R  + +N   L   + N E++    
Sbjct: 205 SGPFKFKEYRAGQYYALTRFDDYWNGKAKLDSVTYRFAKDSNAANL--ALQNGEINLKMV 262

Query: 248 FVPDIDRTYAAANPNHHYWYPAAGTQAFMVNFKNPDPAKKEALDNVDFRRAFSMALDRQT 307
              D++R       +    YP  G  A+M   +N    K +AL     R+A + A+++  
Sbjct: 263 DPQDVNRLKNTGKFD-FVVYP-EGRLAYMTFNQNVPVMKSKAL-----RQAIAYAINKDE 315

Query: 308 IIDIAFYGSGTVNDFASGLGYAFEAWSDEATHKKYKGFNTYDVEGSKKLLAKAGFKDVNG 367
           +   AF          + L YA  A S       YK   T DVE  K  L KA  KD+  
Sbjct: 316 LTQTAF----------TSLDYAKPATSFLTPDTLYK---TDDVEQYKFDLQKA--KDLLK 360

Query: 368 DGFVETPSGKSFELLIQSPNGWTDFNNTVQLAVEQ-LQEVGIKAKARTPEFAVYNQAMLE 426
                 P      L   + N       ++ L ++Q L+ +G+  +    +    +Q  L+
Sbjct: 361 TS--GAPDNLKLRLAYVNTN---KTQESMALYIQQALKGIGVNVELMPLDSNAMSQRSLD 415

Query: 427 ---GTYDVAYTNYFHGADPFTYWNSGYNSALQSGDGMPRFAMHYFTDKKLDGLLDSFYKT 483
                +++    Y  G++P      GY S   S +    +   ++ + + D L D     
Sbjct: 416 MNNTAWELNLGGYIMGSEP-----DGYKSLFMSNEA---YNYAHYKNPQFDALWDKGAVE 467

Query: 484 ADKNEQLAIAHGIQKIIAENQVTIPV 509
            D  ++  I   IQ+ +A +    P+
Sbjct: 468 TDAAKRADIYKQIQQTVANDMTYYPI 493