Pairwise Alignments

Query, 556 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 531 a.a., ABC-type dipeptide transport system, periplasmic component from Enterobacter asburiae PDN3

 Score =  101 bits (251), Expect = 8e-26
 Identities = 144/577 (24%), Positives = 239/577 (41%), Gaps = 98/577 (16%)

Query: 6   KKTALAAAVIAAATSVSAPAFARSELTIVPDFYPTMVRNFNPYLATNLRTTTDF----IY 61
           K T LA A+  AA +VS+   A++ L    +  P    NFNP L T+  T+ D     +Y
Sbjct: 4   KLTTLALAL--AALTVSSTVAAKT-LVYCSEGSP---ENFNPQLYTS-GTSVDASAVPVY 56

Query: 62  EPLVVFNEMKGNTPVF-RLAESYKMADDLMSVTFDIRKGVKWSDGEAFT------ADDVV 114
             LV F    G T +   LAE ++++DD    TF +RKGVK+   ++FT      ADDV+
Sbjct: 57  NRLVDFKP--GTTELVPSLAERWEVSDDGKVYTFHLRKGVKFQSNKSFTPTRDFNADDVI 114

Query: 115 YSFGLLK------------AKPELDQRGINKWVTSVEKVDEYKVRFRLSEANSNVPYEIS 162
           +SF   K            +    +       +T ++KVD++ VRF L  A+   P+   
Sbjct: 115 FSFMRQKDVNHPYHNVSNGSYSNFESLEFGSLITGIDKVDDHTVRFTL--AHPEAPFVAD 172

Query: 163 LIPIVAEHVWKDVKDPTTFTNE------NPVGTGPFTVIDTFTPQLYIQCRNPNYWDAAN 216
           L    A  +  +  D              P+GTGPF +         +     +YW   +
Sbjct: 173 LAWYFASILSAEYADAMLKAGTPEKVDMEPIGTGPFKLAQYQKDSRILFTAFADYWQGKS 232

Query: 217 LEVDCLRVPQIANNDQLLGKIVNSELDWTSSFVPDIDRTYAAANPNHHYWYPAAGTQAFM 276
            ++D L      +      KI  +E      F    D     AN + +    A     F+
Sbjct: 233 -KLDRLVFSITPDASVRFAKIEKNECQ-VMPFPNPADLPRMKANKDINLMSKAGLNTGFL 290

Query: 277 VNFKNPDPAKKEALDNVDFRRAFSMALDRQTIIDIAFYGSGTVNDFASGLGYAFEAWSDE 336
                    +K  LDNV  R+A +MA+++  IID  F+G+GT        G     W  +
Sbjct: 291 AF-----NTQKPPLDNVKVRQALAMAINKPAIIDAVFHGTGTAAKNLLPPG----VWGAD 341

Query: 337 ATHKKYKGFNTYDVEGSKKLLAKAGFKDVNGDGFVETPSGKSFELLIQSPNGWTDFNNTV 396
           +  K Y     YD E +K LL +AGF   NG       S + + + +Q P     +N   
Sbjct: 342 SELKDY----DYDPEKAKALLKEAGF--ANG------VSVELWAMPVQRP-----YNPNA 384

Query: 397 QLAVEQLQ----EVGIKAKARTPEFAVYNQAMLEGTYDVAY----------TNYFHGADP 442
           +   E +Q    ++G++ K  T E+  Y + +  G +  A            N+F     
Sbjct: 385 KRMAEMIQADWAKIGVQTKIVTYEWGEYLKRVKGGEHQAALMGWTTATGDPDNFFGPLFT 444

Query: 443 FTYWNSGYNSALQSGDGMPRFAMHYFTDKKLDGLLDSFYKTADKNEQLAIAHGIQKIIAE 502
            T  N G NSA              +  K  D ++     T D+++++A+    Q+++  
Sbjct: 445 CTSANGGSNSA-------------KWCYKPFDKIIAEAKSTTDRDKRVALYKEAQQMM-H 490

Query: 503 NQVTIPVMSGAWMYQYNTTRFTGWWSEENPKGRPSVW 539
           +Q+   +++ + +++      TG+  E +P G+   W
Sbjct: 491 DQMPAVMIAHSTIFEPVRKEVTGY--EIDPFGKHLFW 525