Pairwise Alignments

Query, 556 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 532 a.a., ABC-type dipeptide transport system, periplasmic component from Enterobacter asburiae PDN3

 Score =  116 bits (290), Expect = 3e-30
 Identities = 144/562 (25%), Positives = 236/562 (41%), Gaps = 110/562 (19%)

Query: 7   KTALAAAVIAAATSVSAPAFARSELTIVPDFYPTMVRNFNPYLATN---LRTTTDFIYEP 63
           KT LA A+ A   + +A A     L    +  P    +FNP +A++      ++  +Y  
Sbjct: 5   KTLLALALSALLPAGAAWAANSDTLIYCSEASP---ESFNPQIASSGPSFVASSQVLYNR 61

Query: 64  LVVFNEMKGNTPVFRLAESYKMADDLMSVTFDIRKGVKWSDGE------AFTADDVVYSF 117
           L+ F+ +K NTPV  LAES+ ++ D  + TF +RKGVK++  +       F ADDV++S 
Sbjct: 62  LINFDPVK-NTPVSSLAESWTISPDGKTYTFALRKGVKFNSNKYFKPTRDFNADDVIFSV 120

Query: 118 GLLKAKPE-------------LDQRGINKWVTSVEKVDEYKVRFRLSEANSN--VPYEIS 162
            L +  P+              +  G++K +  V+KVD+Y V+F LSE N+     + + 
Sbjct: 121 -LRQKDPKHPYHNVSQGNYEYFNDVGLDKLIQDVKKVDDYHVQFTLSEPNAAFLADWGMD 179

Query: 163 LIPIV-AEHVWKDVKDPTTFTNEN-PVGTGPFTVIDTFTPQLYIQCRNPNYWDAANLEVD 220
              I+ AE+    +K  T    +  P+GTGP+ +       L     NPNYW+       
Sbjct: 180 FASILSAEYADAMLKKGTPENVDTWPIGTGPYVLQQYKVDSLIRYVANPNYWE------- 232

Query: 221 CLRVPQIANNDQLLGKIVNSELDWTSSFVPDIDRTYAAANPNHHYWYPAAGTQAFMVNFK 280
                         G++    L +  S  P+++   A    N     PA     F     
Sbjct: 233 --------------GEVPTKHLIF--SITPNVETRLAKLQTNECQIIPAPSPVQFDAIKN 276

Query: 281 NPD----------------PAKKEALDNVDFRRAFSMALDRQTIIDIAFYGSGTVNDF-- 322
           N D                  +K+  DNV  R+A + A D++ I++  F GSGTV     
Sbjct: 277 NKDLTLHSVDALNVGYLAFNTEKKPFDNVLVRQALNYATDKKAIVNAVFMGSGTVAKSPI 336

Query: 323 -ASGLGYAFEAWSDEATHKKYKGFNTYDVEGSKKLLAKAGFKDVNGDGFVETPSGKSFEL 381
             + LG+          +K  K + +YD E +K LL +AG +             K  E+
Sbjct: 337 PPNMLGF----------NKDLKDY-SYDPEKAKALLKQAGLE-------------KGAEV 372

Query: 382 LIQSPNGWTDFNNTVQLAVEQLQ----EVGIKAKARTPEFAVYNQAMLEGTYDVAYTNYF 437
            + S      +N   +   E +Q    +VG+KAK  + E+  Y   M +G +D A   + 
Sbjct: 373 TLWSMPVQRPYNPNSRRIAEMIQSDWAKVGVKAKIVSYEWGEYLSGMRKGEHDSALFGWM 432

Query: 438 -HGADPFTYWN--SGYNSALQSGDGMPRFAMHYFTDKKLDGLLDSFYKTADKNEQLAIAH 494
               DP  + +   G NS +++G    R+      DK  D L+     T+   E+  +  
Sbjct: 433 SDNGDPDNFADVLLGCNS-IKTGSNAARWC-----DKGYDALVQKAKLTSSPAERAKLYG 486

Query: 495 GIQKIIAENQVTIPVMSGAWMY 516
             Q+I  +    I + +G   Y
Sbjct: 487 QAQEIFYQQAPWIALANGKTFY 508