Pairwise Alignments

Query, 556 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 532 a.a., Periplasmic dipeptide transport protein from Azospirillum sp. SherDot2

 Score = 97.8 bits (242), Expect = 9e-25
 Identities = 148/533 (27%), Positives = 220/533 (41%), Gaps = 75/533 (14%)

Query: 5   IKKTALAAAV-IAAATSVSAPAFARSELTIVPDFYPTMVRNFNPYLATNLRTTTDF---- 59
           +K+  L A + +AAA ++SAPA A   L    +  P    NFNP L T   T T F    
Sbjct: 1   MKRILLGAGLGMAAALALSAPAQAAKTLVYCSEGSP---ENFNPMLNT---TGTSFDVAL 54

Query: 60  -IYEPLVVFNEMKGNTPVFRLAESYKMADDLMSVTFDIRKGVKWSDGEAF------TADD 112
            +Y  LV F E  G   V  LAES+ ++DD +  TF +R G KW     F       ADD
Sbjct: 55  PVYNNLVQF-EHGGTKVVPGLAESWTISDDGLVYTFKLRAGAKWHSVGDFKPTRDANADD 113

Query: 113 VVYSFGLLKAKPE-------------LDQRGINKWVTSVEKVDEYKVRFRLS--EANSNV 157
           V++SF   + KPE              +   + K + S+EKVD+  V+F L+  EA    
Sbjct: 114 VIFSFE-RQWKPEHPFHKISGGAYDYFNDMAMPKLLKSIEKVDDLTVKFTLNAVEAPFLA 172

Query: 158 PYEISLIPIV-AEHVWKDVKDPT-TFTNENPVGTGPFTVIDTFTPQLYIQCRNPNYWDAA 215
              +   PI+ AE+    +K  T    ++ PVGTGPF  +      +        YW   
Sbjct: 173 NLAMPFAPIMSAEYGAMLLKKGTPEKLDQVPVGTGPFQFVAYQKDAVIRYKAFEQYW-GG 231

Query: 216 NLEVDCLRVPQIANNDQLLGKIVNSELDWTSSFVP-DIDRTYAAANPNHHYWYPAAGTQA 274
              +D L      +    L K+  +E        P DID                 G   
Sbjct: 232 KQPLDNLVFAITPDAAVRLAKLKANECQIMPYPNPADID---GMKKDTSIVVQEQEGLNV 288

Query: 275 FMVNFKNPDPAKKEALDNVDFRRAFSMALDRQTIIDIAFYGSG--TVNDFASGLGYAFEA 332
             V+F       K+  D+V  RRA SMALD++  +   +  +G    N     +      
Sbjct: 289 GYVSFN----VTKKPFDDVRVRRAVSMALDKKATVAAVYQAAGVPAKNPIPPTM------ 338

Query: 333 WSDEATHKKYKGFNTYDVEGSKKLLAKAGFKDVNGDGFVETPSGKSFELLIQSPNGWTDF 392
           WS     + Y     YDVE +KKLLA AG+     +GF ET     + + +Q P    + 
Sbjct: 339 WSYNDAIEDY----PYDVERAKKLLADAGYP----NGF-ET---DLWAMPVQRPYN-PNA 385

Query: 393 NNTVQLAVEQLQEVGIKAKARTPEFAVYNQAMLEGTYD---VAYTNYFHGADPFTYWNSG 449
               ++    L +VGIKAK    E+  Y + M +G +    + +T      D F Y   G
Sbjct: 386 KRVAEMMQADLAKVGIKAKIVQYEWGEYRKRMQQGEHQMGMLGWTGDNGDPDNFLYTLLG 445

Query: 450 YNSALQSGDGMPRFAMHYFTDKKLDGLLDSFYKTADKNEQLAIAHGIQKIIAE 502
             +A   G+ + ++      +K+ D L+    +T D   +  +    Q I  E
Sbjct: 446 CEAARPGGNNLSKWC-----NKEFDDLVVQAKRTTDIAARTKLYEQAQVIFKE 493