Pairwise Alignments

Query, 556 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 623 a.a., hypothetical protein from Azospirillum sp. SherDot2

 Score = 94.4 bits (233), Expect = 1e-23
 Identities = 125/546 (22%), Positives = 215/546 (39%), Gaps = 69/546 (12%)

Query: 44  NFNPYLATNLRTT-TDFIYEPLVVFNEMKGNTPVFRLAESYKMADDLMSVTFDIRKGVKW 102
           N NP++           +++ L   N  +  T    LAES ++A D   V F +R   ++
Sbjct: 81  NLNPFILRGQAAAGAGLVFQTLTTSNGDEAITEYGLLAESIEIAPDRTWVAFTLRPEARF 140

Query: 103 SDGEAFTADDVVYSFGLLKAKPELDQRGINKWVTSVEKVDEYKVRFRLSEANS-NVPYEI 161
            DG+  TADDV++SF  LK K     R     VT  EK  E  V+F   + N+  +P  +
Sbjct: 141 HDGQPVTADDVIWSFDTLKEKGHPLYRTYYADVTKAEKTGERTVKFSFRDGNNPELPVIM 200

Query: 162 SLIPIVAEHVWKDVKDPTTFTNENPVGTGPFTVIDTFTPQLYIQCRNPNYW------DAA 215
             +P++ +H + + +D  T T +  +G+GP+ V++    +     R  ++W      +  
Sbjct: 201 GQLPVLPKHAFAN-RDFATTTLDPLIGSGPYKVVEVQAGRAITYERVKDWWAKDLPINRG 259

Query: 216 NLEVDCLRVPQIANNDQLLG---------KIVNSELDWTSSF-VPDIDRTYAAANPNHHY 265
               D +R     + D             ++ NS  +WT+ + VP +           H 
Sbjct: 260 RYNFDRIRYDYYRDLDVAFEAFKAGAYDFRLENSSKNWTTGYNVPAVQNGQIIKEEIKH- 318

Query: 266 WYPAAGTQAFMVNFKNP---DPAKKEALD---NVDFRRA-FSMALDRQT---IIDIAFYG 315
                G QAF+ N + P   D   +EAL+   + ++ RA  S  L ++T     +     
Sbjct: 319 -EDPQGMQAFVFNIRRPVFQDRRVREALNYLFDYEWTRANLSYGLYQRTRSYFANTELAS 377

Query: 316 SGTVNDFASGLGYAFEAW-SDEATHKKYKGFNTYDVEGSKK--------LLAKAGFKDVN 366
           +G  +     L   F     DE   K Y+   T D  G+ +        LL  AG+   N
Sbjct: 378 TGLPSPEELKLLEPFRGQIPDEVFTKPYEPPKT-DASGNIRGNLRTALGLLKDAGWDLKN 436

Query: 367 GDGFVETPSGKSFE---LLIQSPNGWTDFNNTVQLAVEQLQEVGIKAKARTPEFAVYNQA 423
           G   +    G+ F    LL+Q+     D    VQ  V  L+  GI+A+ R  + A Y   
Sbjct: 437 GK--LVNAQGQPFRFEFLLVQA-----DMERIVQPFVRNLERAGIEAQIRVVDSAQYQNR 489

Query: 424 MLEGTYDVAYTNYFHGADPFT----YWNSGYNSALQSGDGMPRFAMHYFTDKKLDGLLDS 479
                YD+    +     P      YW S       S + +         +  +D L+++
Sbjct: 490 TDNFDYDMIIERFPQSLSPGNEQRDYWESSRADQPGSRNSIG------IKNPAIDKLVET 543

Query: 480 FYKTADKNEQLAIAHGIQKIIAENQVTIPVMSGAWMYQYNTTRFTGWWSE-ENPKGRPSV 538
                D+   +A    + +++  N   IP       + ++T     +W+   +P   P  
Sbjct: 544 LIAAPDRPALIAATRALDRVLLWNWYVIP-------HWHDTVYRVAYWNRFSHPAVAPKY 596

Query: 539 WAGIPE 544
             G P+
Sbjct: 597 GLGFPD 602