Pairwise Alignments

Query, 556 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 519 a.a., ABC transporter substrate binding protein (oligopeptide) from Agrobacterium fabrum C58

 Score = 84.3 bits (207), Expect = 1e-20
 Identities = 121/492 (24%), Positives = 188/492 (38%), Gaps = 76/492 (15%)

Query: 39  PTMVRNFNPYLATNLRTTTDFIYEP-------LVVFNEMKGNTPVFRLAESYKMADDLMS 91
           P M +N    L+  + +     Y         + +F+ +   T   RL E      D +S
Sbjct: 19  PVMAKNLTIGLSGTVTSIDPHFYNASPNNAIAMQIFDRLTERTAEGRLVEGLATKWDTVS 78

Query: 92  VT---FDIRKGVKWSDGEAFTADDVVYSFGLLKAKPELDQ--RGINKWVTSVEKVDEYKV 146
            T   F +R GVKW DG+ FT+DDV+++     + P       G  + + SVE   +  V
Sbjct: 79  ETKWRFALRDGVKWHDGKPFTSDDVIFTLDRAGSVPNSPGGFGGFMRNIASVEADGDNAV 138

Query: 147 RFRLSEANSNVPYEISLIPIVAEHVWKDVKDPTTFTNENPVGTGPFTVIDTFTPQLYIQC 206
                     +P +++ I IV+ H  +        + +  +GTG F  + TF   + +  
Sbjct: 139 IISTKAPAPTLPGDLANIAIVSRHAGEGADTADYNSGKAAIGTGAFR-LTTFKQGIEVGL 197

Query: 207 -RNPNYWDAANLEVDCLRVPQIANNDQLLGKIVNSELDWTSS-FVPDIDRTYAAANPNH- 263
            RNP++W    +  D      I++        +  ++D   +    DI R    AN +  
Sbjct: 198 ERNPDWW-GKKVAWDHATYRMISSASARTTAALAGDVDVIDAPAATDIARFKTTANLSFV 256

Query: 264 -------HYWYPAAGTQAFMVNFKNPDPAKKEALDNVDF-----RRAFSMALDRQTIIDI 311
                   Y  P+    A+    K P   K EALDN        R A S A++R+ I+D 
Sbjct: 257 STPGLRVIYLAPSTSGDAWKAFVKGP---KGEALDNNPLADPRVRNALSEAINREGIVDK 313

Query: 312 AFYGSGTVNDFASGLGYAFEAWSDEATHKKYKGFNTYDVEGSKKLLAKAGFKDVNGDGFV 371
              G+ T    ASG      A+S     +  K     D  G+KKLLA AG+ D       
Sbjct: 314 IMEGTAT----ASGQWLPKGAFSYTPDIQPPKP----DAAGAKKLLADAGYPD------- 358

Query: 372 ETPSGKSFELLIQSPNG-WTDFNNTVQLAVEQLQEVGIKA----------KARTPEFAVY 420
                  F+L +  PN  + +    VQ   +    +G+K            +R  EFA+ 
Sbjct: 359 ------GFQLTVHVPNDRYPNAPAVVQAVAQMWTRIGVKTNVEALPWTTFSSRKSEFAMK 412

Query: 421 NQAMLEGTYDVA--YTNYFHGADPFTYWNSGYNSALQSG------DGMPRFAMHYFTDKK 472
              +   TYD +    N     DP      G  +A  SG      D +   AM  + DK 
Sbjct: 413 LLGLGNATYDASSMLVNVLGTVDP----KRGLGAANDSGYSNPALDDLVSKAMMIYDDKA 468

Query: 473 LDGLLDSFYKTA 484
            +  L    K A
Sbjct: 469 REAALIEAVKVA 480