Pairwise Alignments

Query, 556 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 511 a.a., oligopeptide ABC transporter substrate-binding protein from Agrobacterium fabrum C58

 Score = 90.5 bits (223), Expect = 1e-22
 Identities = 126/522 (24%), Positives = 210/522 (40%), Gaps = 52/522 (9%)

Query: 8   TALAAAVIAAATSVSAPAFARSELTIVPDFYPTMVRNFNPYLATNLRTTTDFIYEPLVVF 67
           T   A  +AA    +APAFA  ++TI     P      + +L       T+       +F
Sbjct: 10  TTFVALAMAATAFTAAPAFAAGKMTISSPQDPGSWDPIDTFLVQWAAVATN-------IF 62

Query: 68  NEMKGNTPVFRLA----ESYKMADDLMSVTFDIRKGVKWSDGEAFTADDVVYSFGLLKAK 123
           + +    P  +LA    ES++  D+   + F +R+ VK+ +GE F A  V ++F  L  +
Sbjct: 63  DGLTYRGPDLKLAPGLAESWEELDEGKRIRFKLRQNVKFHNGEPFNAAAVKFTFERLLGE 122

Query: 124 --PELDQRGINKWVTSVEKVDEYKVRFRLSEANSNVPYEIS-LIPIVAEHVWKDVKDPTT 180
              +  QR     + SV+ +D+Y V  +L   +  +  +++    ++    +   K    
Sbjct: 123 QGAKGPQRSNYVAIESVDVIDDYTVDMKLKAPDPVLLTKLAGYGGMIVPPAYIKEKGEDN 182

Query: 181 FTNENPVGTGPFTVIDTFTPQLYIQCR-NPNYWDAANLEVDCLRVPQIANNDQLLGKIVN 239
           F N NPVGTG F  + ++ P+  I+   NP+YW  A  ++  L    IA     + ++  
Sbjct: 183 F-NLNPVGTGAFKFV-SYAPKNNIKLEANPDYWGGAP-KLSELEYRFIAEPSTAVAELQA 239

Query: 240 SELDWTSSFVPDIDRTYAAANPNHHYWYPAAGTQAFMVNFKNPDPAKKEALDNVDFRRAF 299
             +D        I         +        G     + F   D    +       R+A 
Sbjct: 240 GRVDLVIPPTIPIGMIPVIEGDSKLQIVSVPGPTVDALRFNTRDGITADP----KVRKAI 295

Query: 300 SMALDRQTIIDIAFYGSGT-VNDFASGLGYAFEAWSDEATHKKYKGFNTYDVEGSKKLLA 358
            MA+DR TI+     G  + +  F S L + ++                YD +G+KKLLA
Sbjct: 296 IMAVDRGTIVKSILAGQASEIASFQSALSFGYDPELKPL---------PYDPDGAKKLLA 346

Query: 359 KAGFKDVNGDGFVETPSGKSFELLIQSPNGWTDFNNTVQLAVEQLQEVGIKAKARTPEFA 418
           +AG K            G + ++ I+  +     N   Q+    L  VGI A  +  E  
Sbjct: 347 EAGVK-----------PGAALQIDIRGND--ATMNEVAQVISSYLSMVGITATIKPYETN 393

Query: 419 V-YNQAMLEGTYDVAYTNYFHGADPFTYWNSGYNSALQSGDGMPRFAMHYFTDKKLDGLL 477
           V  N  + +G     +   + G   F Y N+ Y S   SG+        Y  D+KLD LL
Sbjct: 394 VLLNDIIPQGKTGAMFQQKW-GGWTFDYDNTAY-SMYHSGEKW----NPYDKDEKLDKLL 447

Query: 478 DSFYKTADKNEQLAIAHGIQKIIAENQVTIPVMSGAWMYQYN 519
           +S     D+ E+  I   +    AE  + IP+ +   +Y  N
Sbjct: 448 ESQRPLTDRAEREKILKELGSYTAERALEIPLYNTNAIYGIN 489