Pairwise Alignments

Query, 556 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 511 a.a., oligopeptide ABC transporter substrate-binding protein from Agrobacterium fabrum C58

 Score = 93.6 bits (231), Expect = 2e-23
 Identities = 127/507 (25%), Positives = 215/507 (42%), Gaps = 68/507 (13%)

Query: 9   ALAAAVIAAATSVSAPAFARSELTIVPDFYPTMVRNFNPYLATNL---RTTTDFIYEPLV 65
           AL  A+    + V+A A  ++ LT+     PT     +P +A  +   + T   I+E LV
Sbjct: 21  ALGTALWLPLSVVNAEAAPKTALTLGMTVEPT---GLDPTIAAPVAIGQVTWQNIFEGLV 77

Query: 66  VFNEMKGNTPVFRLAESYKMADDLMSVTFDIRKGVKWSDGEAFTADDVVYSFGLLKAKPE 125
             +      P  +LAES++++ D  S TF +RKGV + DGEAF  D  V  F L +A+ E
Sbjct: 78  TIDSKGKVKP--QLAESWEISPDGKSYTFKLRKGVTFHDGEAF--DSAVAKFSLDRARGE 133

Query: 126 LD---QRGINKWVTSVEKVDEYKVRFRLSEANSNVPYEISLIPIVAEHVWKDVKDPTTFT 182
                Q+     + S+E  D   +  +L +   ++ Y +     V         + TT  
Sbjct: 134 ASVNPQKRFFAAIDSIETPDADTLVLKLKQPAGSLIYWLGWPASVMVAPKSAEANRTT-- 191

Query: 183 NENPVGTGPFTVIDTFTPQLYIQCRNPNYWD-AANLEVDCLRVPQIANNDQLLGKIVNSE 241
              PVGTGPF  +           +N  YWD A  +++D      +A+       + + +
Sbjct: 192 ---PVGTGPFKFVSWAKGDKVELEKNAAYWDKAVAVKLDKATFRFVADPQAQAAALKSGD 248

Query: 242 LDWTSSF-VPDIDRTYAAANPNHHYWYPAAGTQAFMVNFKNPDPAKKEALDNVDFRRAFS 300
           +D    F  P++  ++   + +         T+  +V   N     ++  ++   R+A  
Sbjct: 249 IDAFPEFGAPELMTSF---DGDKRLGTFVGNTELKVVAGMN---NARKPFNDKRVRQALM 302

Query: 301 MALDRQTIIDIAFYGSGTVNDFASGLGYAFEAWSDEATHKKYKGFNTYDVEGSKKLLAKA 360
           MA+DR T+I+ A+ G GT    A G  Y      ++  +    G +++D++ +K LLA+A
Sbjct: 303 MAVDRGTVIEGAWSGYGT----AIGSHYT----PNDRGYVDTTGVHSFDIDKAKALLAEA 354

Query: 361 GFKDVNGDGFVETPSGKSFELLIQSPNGWTDFNNTVQLAVEQLQEVGIKAKARTPEF-AV 419
           G+ D              F   I++P        T Q+    L E+G+     T EF A 
Sbjct: 355 GYAD-------------GFSFTIKAPQ-MAYAQRTSQILQAMLAEIGVTMTIETTEFPAK 400

Query: 420 YNQAMLEGT-YDVAYTNYFHGADPFTYWNSGYNSALQSGDGMPRFAMHYFTDKK--LDGL 476
           +   +L+G  YD+    +    D   Y    Y                YF  K    + +
Sbjct: 401 WVADVLKGADYDMTIVAHAEPMDIDIYARDPY----------------YFNYKNPAFNEV 444

Query: 477 LDSFYKTADKNEQLAIAHGIQKIIAEN 503
           + +  KTA+  EQ A+    QKI+AE+
Sbjct: 445 IANVEKTANAGEQEALYGDAQKILAED 471