Pairwise Alignments

Query, 556 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 543 a.a., oligopeptide ABC transporter substrate-binding protein from Agrobacterium fabrum C58

 Score = 92.4 bits (228), Expect = 4e-23
 Identities = 134/542 (24%), Positives = 220/542 (40%), Gaps = 66/542 (12%)

Query: 6   KKTALAAAVIAAATSV-SAPAFARSE------LTIVPDFYPTMVRNFNPYLATNLRTTTD 58
           +KT L +A +A A  + S PA A         +T+     PT +   +    T  R  + 
Sbjct: 20  RKTLLLSAALAGAMLLPSMPALATETPKKGGIVTLAGLGEPTTLVPLSDS-NTRTRAIST 78

Query: 59  FIYEPLVVFNEMKGNTPVFRLAESYKMADDLMSVTFDIRKGVKWSDGEAFTADDVVYSFG 118
            I E LV F+      PV  LAES++ + D +  TF +RKGVKW DG+ FTA DV +S  
Sbjct: 79  KILEGLVRFDSEFKPHPV--LAESWETSADGLRYTFKLRKGVKWHDGKDFTAQDVKFS-- 134

Query: 119 LLKAKPELDQRGINKW--VTSVEKVDEYKVRFRLSEANSNVPYEISLI-----PIVAEHV 171
            L A  ++  RG   +  +  +E  +       LS+     PY +  +     PI+  H 
Sbjct: 135 -LLAFKKVGPRGRITFANLADIETPNPLTAVVVLSKP---APYLLRALTGGETPILPAHA 190

Query: 172 WKDVKDPTTFTNENPVGTGPFTVIDTFTPQLYIQC-RNPNYWDAANLEVDCLRVPQIANN 230
           +       +     PVGTGPF V + +    Y++  +NP+YW A    +D      +A+ 
Sbjct: 191 YASENYNESPNGNAPVGTGPF-VFEEWKRGSYVKLKKNPDYWQADLPYLDGFVARFVADA 249

Query: 231 DQLLGKIVNSELDWTSSF-VPDIDRTYAAANPNHHYWYPAAGTQA--FMVNFKNPDPAKK 287
                 +   E D+T+     D++R           +  A    A  F  N +N   AKK
Sbjct: 250 ASTTISVETGEADYTADVSYSDLERLRQNPKLAVEVYTDAYLNNAAIFEFNLENAILAKK 309

Query: 288 EALDNVDFRRAFSMALDRQTIIDIAFYGSGTVNDFASGLGYAFEAWSDEATHKKYKGFN- 346
           E       R A + A+DR  I D  F+  GT     S +   F  ++DE      K F  
Sbjct: 310 EV------RHALAHAIDRNFINDAIFF--GTAKPAGSNIPAVFSTYNDE------KPFTY 355

Query: 347 TYDVEGSKKLLAKAGF-KDVNGDGFVETPSGKSFELLIQSPNGWTDFNNTVQLAVEQLQE 405
            +D+  + +LL KAG+ K  +G  F       S  L     +    F  T +       +
Sbjct: 356 PFDLAKANELLDKAGYPKGADGTRF-------SLRLAFLPSD---VFRKTSEYLRSSFGK 405

Query: 406 VGIKAKARTPEFAVY-NQAMLEGTYDVAYTNYFHGADPFT-----YWNSGYNSALQSGDG 459
           +G+K      + A +  +   E  +D+         DP       YW+ G  +       
Sbjct: 406 LGVKVDIVEGDLATFIKRVYTERGFDLTVNGISRLFDPTAGVQRLYWSDGIKNP------ 459

Query: 460 MPRFAMHYFTDKKLDGLLDSFYKTADKNEQLAIAHGIQKIIAENQVTIPVMSGAWMYQYN 519
            P     ++ +  +D L  +     D+ ++    H IQK++ ++     +++   +   N
Sbjct: 460 APYVNAAHYNNPTVDDLFRAAAIEVDETKRAGQFHEIQKVVGDDLPNFSIVALPTVILRN 519

Query: 520 TT 521
           T+
Sbjct: 520 TS 521