Pairwise Alignments

Query, 556 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 531 a.a., oligopeptide ABC transporter substrate-binding protein from Agrobacterium fabrum C58

 Score = 85.9 bits (211), Expect = 4e-21
 Identities = 107/472 (22%), Positives = 198/472 (41%), Gaps = 60/472 (12%)

Query: 60  IYEPLVVFNEMKGNTPVFRLAESYKMADDLMSVTFDIRKGVKWSDGEAFTADDVVYSFGL 119
           IY+ L+ ++      P   LA+ + ++ D +   F ++   K+ DG+  T+ DV +S   
Sbjct: 66  IYDGLLTYDYELSPKP--SLAKEWSVSADGLEYVFHLQPNAKFHDGKPVTSADVEFSILR 123

Query: 120 LKAKPELDQRGINKWVTSVEKVDEYKVRFRLSEANSNVPYEISLI-----PIVAEHVWKD 174
           LK   E   RG      +VE +D         + +   P  I+ +     P+V +H+++ 
Sbjct: 124 LK---EAHPRG-RATFANVESIDTSNPLVAKVKLSKPAPGLITALASSESPVVPKHIFET 179

Query: 175 VKDPTTFTNENPVGTGPFTVIDTFTPQLYIQC-RNPNYWDAANLEVDCLRVPQIANNDQL 233
            K          +G+GPF V+  + P  +I   +N NYWDA    +D + +  I +    
Sbjct: 180 FKPTDNPKPAQIIGSGPF-VLKEWVPGSHILLEKNANYWDAPRPYLDRVIIRLINDAGAR 238

Query: 234 LGKIVNSELDWTSSFVPDIDRTYAAANPN---HHYWYPAAGTQ-AFMVNFKNPDPAKKEA 289
              +   E D   + V   D     + P        Y  AG Q   ++N +N      + 
Sbjct: 239 AAALETGEGDIGPNPVALADLERLKSIPTLKVDDRIYAYAGQQNQLVINLEN------DY 292

Query: 290 LDNVDFRRAFSMALDRQTIIDIAFYGSGTVNDFASGLGYAFEAWSDEATHKKYKGFNTYD 349
           L  +  R+A + A+D   +ID   YG    +      G A         H    GF  +D
Sbjct: 293 LKELKVRQAIAHAIDVPALIDTVLYGYAVPSPTPISPGLA-------KFHNPDIGFAKFD 345

Query: 350 VEGSKKLLAKAGFKDVNGDGFVETPSGKSFELLIQ----SPNGWTDFNNTVQLAVEQLQE 405
           V  ++KLL +AGF   +G        GK F+L +     +P  ++DF        + L +
Sbjct: 346 VALAEKLLDEAGFPRKDG--------GKRFKLRVTTNPFNPQTYSDF------IAQALSK 391

Query: 406 VGIKAKARTPEFAVYNQAM-LEGTYDVAYTNYFHGADPF-----TYWNSGYNSALQSGDG 459
           +GI+A  +  +F  Y + +  +  +D++  +  +  DP       YW+  +        G
Sbjct: 392 IGIEADIQKFDFGTYVKVVYTDRAWDLSVESLSNTFDPTAGVQRVYWSKNFKI------G 445

Query: 460 MPRFAMHYFTDKKLDGLLDSFYKTADKNEQLAIAHGIQKIIAENQVTIPVMS 511
           +P     ++ + ++D LL++     D  ++ A     Q ++A++   I ++S
Sbjct: 446 LPFSNASHYANPEVDRLLEAAAVEPDIEKRAAFFKEFQAVVAKDLPVINLVS 497