Pairwise Alignments

Query, 556 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 535 a.a., oligopeptide ABC transporter substrate-binding protein from Agrobacterium fabrum C58

 Score =  116 bits (291), Expect = 2e-30
 Identities = 125/500 (25%), Positives = 217/500 (43%), Gaps = 65/500 (13%)

Query: 47  PYLATNLRTTTDFIY------EPLVVFNEMKGNTPVFRLAESYKMADDLMSVTFDIRKGV 100
           P L T   T  + +Y      E L+ ++      P+  LA+S+ ++ D +  TF++R GV
Sbjct: 49  PVLTTIAHTAYNSVYISPKVTEGLLTYDFDLNPKPL--LAKSWDVSADGLRYTFNLRPGV 106

Query: 101 KWSDGEAFTADDVVYSFGLLKAKPELDQRGINKW--VTSVEKVDEYKVRFRLSEANSNVP 158
           KW DG+ FT+ DV +S   +K   E+  RG N +  +T+VE  +E      LS+     P
Sbjct: 107 KWHDGKPFTSADVAFSISTIK---EVHPRGRNTFLNLTAVETPNELTAVLVLSKP---AP 160

Query: 159 YEISLI-----PIVAEHVWKDVKDPTTFTNENPVGTGPFTVIDTFTPQLYIQCRNPNYWD 213
           Y I+ +     PIV +H+++  K      N  P+GTGPF   +       +  RN +YWD
Sbjct: 161 YLITALAAAETPIVPKHLYEGTKVTENPVNLAPIGTGPFKFKEWVRGSHIVFERNADYWD 220

Query: 214 AANLEVDCLRVPQIANNDQLLGKIVNSELDWTSS---FVPDIDRTYAAAN---PNHHYWY 267
           A    +D L V  I +       I   E+D   S      D+DR     +     + Y Y
Sbjct: 221 APRPYLDRLIVRFIPDASARAIAIETGEIDLAPSTPVAYSDLDRLKELPSLGFDTNGYQY 280

Query: 268 PAAGTQAFMVNFKNPDPAKKEALDNVDFRRAFSMALDRQTIIDIAFYGSGTVNDFASGLG 327
             + ++   V F      +K+   +V  RRAF+  +DR  I +   +G G     A  + 
Sbjct: 281 TNSISR---VEFN----LEKDVFKDVRVRRAFAHVIDRNVIFNTVNFGYGAT--IAGPIN 331

Query: 328 YAFEAW--SDEATHKKYKGFNTYDVEGSKKLLAKAGFKDVNGDGFVETPSGKSFELLIQS 385
                W  +D  T+         D++ ++ LL +AG+K            G  F+L +  
Sbjct: 332 PKLTKWFVNDLKTY-------PIDLKAAEALLDEAGYK--------RGADGIRFKLNLDY 376

Query: 386 PNGWTDFNNTVQLAVEQLQEVGIKAKARTPEFAVYNQAM-LEGTYDVAYTNYFHGADPFT 444
                 +        + L +VG+    RT +FA Y + +  +  +D AY    +  DP  
Sbjct: 377 VPSTEAYPRGADYIRQALAKVGVDVTVRTQDFATYTKRIYTDRDFDFAYEGMSNLFDPTV 436

Query: 445 -----YWNSGYNSALQSGDGMPRFAMHYFTDKKLDGLLDSFYKTADKNEQLAIAHGIQKI 499
                YW+  +   +   +G        +++ K+D LL++     D ++++A    IQ+I
Sbjct: 437 GVQRLYWSKNFKKGVPFSNGAA------YSNPKVDALLEAAAIEIDPDKRVAQWKEIQQI 490

Query: 500 IAENQVTIPVMSGAWMYQYN 519
           + E+   I +++   +  +N
Sbjct: 491 LVEDVPAIDIVAAPEITIFN 510