Pairwise Alignments

Query, 556 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 614 a.a., ABC transporter, substrate binding protein (peptide) from Agrobacterium fabrum C58

 Score = 92.0 bits (227), Expect = 6e-23
 Identities = 123/551 (22%), Positives = 209/551 (37%), Gaps = 74/551 (13%)

Query: 46  NPYLATNLRTT-TDFIYEPLVVFNEMKGNTPVFRLAESYKMADDLMSVTFDIRKGVKWSD 104
           NP LA   R T    +Y+ L+   E + +     LAE     DD+   TF +R+  KW+D
Sbjct: 77  NPLLAKGERATGLSLVYDTLMKSTEEELSASYGLLAEGVSYPDDIEKATFRLRQDAKWAD 136

Query: 105 GEAFTADDVVYSFGLLK-AKPELDQRGINKWVTSVEKVDEYKVRFRLSEANS-NVPYEIS 162
           G+  T +DVV+SF   K   P+L     +  VT  E   E  + F   E N+  +P  + 
Sbjct: 137 GKPVTPEDVVFSFEKAKDLSPQLATYYTH--VTKAEVSGERDITFTFDEKNNRELPQIVG 194

Query: 163 LIPIVAEHVWKDV------KDPTTFTNENPVGTGPFTVIDTFTPQLYIQCRNPNYWDA-A 215
            + IV +H W+        +D +  T E  +G+GP+ +            R  +YW    
Sbjct: 195 QLLIVPKHWWEGTGPDGKPRDISRGTLEPVMGSGPYKIAAVSPGSSVTYERRDDYWGKDV 254

Query: 216 NLEVDCLRVPQI-----ANNDQLLGKIVNSELD---------WTSSF-VPDIDRTYAAAN 260
           N+ V       I     A+ D       +  +D         W + +  P +        
Sbjct: 255 NVNVGMNNFKTIAYTFFADQDVEFQAFKSGTVDFRQEASSSRWVTGYDFPAVKEGRVKKE 314

Query: 261 PNHHYWYPAAGTQAFMVNFKNPDPAKKEALDNVDFRRAFSMALDRQTIIDIAFYGS-GTV 319
              + +      QAF+ N       ++E   N   R+A + A D + +     YG    +
Sbjct: 315 ELPNIYRSVGIMQAFVPNM------RREKFQNPKLRKALNYAFDFEELNRTLAYGQFQRI 368

Query: 320 NDF-------ASGL--GYAFEAWSDEATHKKYKGFNTY--------------DVEGSKKL 356
             F       +SGL  G   E   +       + F T               ++  + KL
Sbjct: 369 TSFFMGSELASSGLPTGRELEILQELKDQVPPEVFTTEYRNPVAGDPAKQRDNLREAVKL 428

Query: 357 LAKAGFKDVNGDGFVETPSGK--SFELLIQSPNGWTDFNNTVQLAVEQLQEVGIKAKART 414
           + +AG+ ++ G+  V   +G+    E LI S    +    T+   V+ L+++GI A  RT
Sbjct: 429 MKEAGY-ELRGNRMVNAATGQQLDMEFLIDS----SGMERTILPYVQNLKKIGINATIRT 483

Query: 415 PEFAVYNQAMLEGTYDVAYTNYFHGADPFTYWNSGYNSALQSGDGMPRFAMHYFTDKKLD 474
            + + Y        +DV    +   A+P       + SA     G    A     +  +D
Sbjct: 484 VDASQYTNRTRSFDFDVTIKLWATSANPGNEQADFWGSAAADRQGSNNLA--GIKNPAVD 541

Query: 475 GLLDSFYKTADKNEQLAIAHGIQKIIAENQVTIPVMSGAWMYQYNTTRFTGWWSE-ENPK 533
            L+       +++EQ+A A  + +++  N   IP         Y    F  +W+    P+
Sbjct: 542 ALVRKVIFAPNRDEQVAAARALDRVLLANSYVIPQF-------YRGEMFIAYWNTLIRPE 594

Query: 534 GRPSVWAGIPE 544
             P    G P+
Sbjct: 595 NLPEYGVGFPD 605