Pairwise Alignments

Query, 328 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 336 a.a., dipeptide ABC transporter, permease component (from data) from Pseudomonas simiae WCS417

 Score =  153 bits (387), Expect = 5e-42
 Identities = 102/336 (30%), Positives = 163/336 (48%), Gaps = 20/336 (5%)

Query: 3   YFLRRLSFYFAALLVAATLNFIIPRAMPGDPVTMMFAHATAQVTPERIEAMKQLLGFVEG 62
           +  RRL            L F + R +PGDPV +M      +V PE      + LG +  
Sbjct: 4   FIARRLGLLIPTFFGITLLTFALIRMIPGDPVEVMMGER--RVDPEMHAQAMERLG-LNK 60

Query: 63  PWYVQYLTYIKSILTWELGTSIKFYPLSVNELLGGAFGWSLFLAGTAVIISFSIGSVLGI 122
           P Y QYL Y+  +   +LG S++    SV       F  +L L+  A++ +  +G + G+
Sbjct: 61  PLYAQYLDYVGKLAQGDLGESLRTRT-SVWTEFTALFPATLELSMAALLFAGILGLLAGV 119

Query: 123 FAAWKRGSRYDTFITPGMLVIQAVPQVVIAMLAMFTFAIGLSWFP--------------T 168
            AA KRGS +D  +    L   ++P     ++ +  F++ L W P              T
Sbjct: 120 IAALKRGSLFDHGVMGISLAGYSMPIFWWGLILIMFFSVSLGWTPVSGRIDLLYDIEPRT 179

Query: 169 GYAYTAGTTPDWTSWAFIKDVGYHAVLPLFCASIVQIGGFLVNMRNNMINLLAEDYITMA 228
           G+        D     +  D  +H +LP      + +       R++M+ +L EDYI  A
Sbjct: 180 GFMLIDTLLADEPDAFW--DALHHLILPAIVLGTIPLAVIARMTRSSMLEVLREDYIRTA 237

Query: 229 KGKGLSENRVVFNYAARNALLPSVTALSMSLGMAIGGQLIIEIIFNYPGLGTVLFNAITA 288
           K KGLS  RVVF +  RNAL+P +T + + +G  + G ++ E IF++PG+G  L  AI A
Sbjct: 238 KAKGLSPARVVFVHGLRNALIPVLTVVGLQVGTLLAGAVLTETIFSWPGIGKWLIEAIGA 297

Query: 289 RDYQVLQGQLLIMTLFMLFFNLLADMLYVVLDPRLR 324
           RDY V+Q  +L++   ++  N + D+LY   +PR+R
Sbjct: 298 RDYPVVQNGILLIACLVILVNFVVDILYGFANPRIR 333