Pairwise Alignments

Query, 328 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 313 a.a., peptide ABC transporter from Pseudomonas simiae WCS417

 Score =  166 bits (421), Expect = 5e-46
 Identities = 98/322 (30%), Positives = 172/322 (53%), Gaps = 13/322 (4%)

Query: 3   YFLRRLSFYFAALLVAATLNFIIPRAMPGDPVTMMFAHATAQVTPERIEAMKQLLGFVEG 62
           + L++L+     LL+ + + F + R +PGDP  +M         P+ +  M+  LG ++ 
Sbjct: 4   FILQKLAMAVPTLLLISVMVFALIRLIPGDPALLMLGD---MADPQSLADMRHTLG-LDH 59

Query: 63  PWYVQYLTYIKSILTWELGTSIKFYPLSVNELLGGAFGWSLFLAGTAVIISFSIGSVLGI 122
               Q+L + K++L+++LG SI     +V  L+   F  S  +   AV+ +  I   +G+
Sbjct: 60  SLVTQFLIWFKAVLSFDLGFSISTKQ-AVLPLILDRFSVSATIVLVAVLFATLIAVPIGL 118

Query: 123 FAAWKRGSRYDTFITPGMLVIQAVPQVVIAMLAMFTFAIGLSWFPTGYAYTAGTTPDWTS 182
            AAWK+ S  D  +     ++ ++P   + +L +  F I L W P    Y + +   W +
Sbjct: 119 IAAWKQNSALDLGLVSIATLLLSIPSFWLGLLLLHAFGIQLGWLPV-VGYVSFSQAPWQA 177

Query: 183 WAFIKDVGYHAVLPLFCASIVQIGGFLVNMRNNMINLLAEDYITMAKGKGLSENRVVFNY 242
            +++       VLP+   ++V++G      R + I +L  +YI  A+ KGLSE  V++ +
Sbjct: 178 MSYM-------VLPVVTLTLVEVGAITRMARASTIEVLRLEYIAHARAKGLSERAVLWKH 230

Query: 243 AARNALLPSVTALSMSLGMAIGGQLIIEIIFNYPGLGTVLFNAITARDYQVLQGQLLIMT 302
           A  NA  P+ T + + LG  +GG  ++E +F  PG+G ++ +AI ARDY VLQG LL++T
Sbjct: 231 ALPNAFAPTWTLVGLILGNLLGGIAVLETVFTLPGIGRLMVDAIFARDYPVLQGCLLLIT 290

Query: 303 LFMLFFNLLADMLYVVLDPRLR 324
              +  NL  D+LY + DPR++
Sbjct: 291 FIYVLVNLCVDLLYPLFDPRVK 312