Pairwise Alignments

Query, 328 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 314 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  150 bits (378), Expect = 5e-41
 Identities = 99/321 (30%), Positives = 162/321 (50%), Gaps = 13/321 (4%)

Query: 3   YFLRRLSFYFAALLVAATLNFIIPRAMPGDPVTMMFAHATAQVTPERIEAMKQLLGFVEG 62
           Y LRR++     LL+ +   F + R +PGDPV +M         P ++  M+  +G ++ 
Sbjct: 4   YLLRRIAMTIPTLLLVSIAVFTLMRLIPGDPVLLMLGEGA---DPAQLALMRHQMG-LDQ 59

Query: 63  PWYVQYLTYIKSILTWELGTSIKFYPLSVNELLGGAFGWSLFLAGTAVIISFSIGSVLGI 122
           P  VQYL +++  LT +LG S     L+V  L+   F  S  +   AV ++  I    G+
Sbjct: 60  PLPVQYLVWLRHALTGDLGVSTT-NGLAVLPLIWERFQVSAVIVLVAVALASLIAVPAGL 118

Query: 123 FAAWKRGSRYDTFITPGMLVIQAVPQVVIAMLAMFTFAIGLSWFPTGYAYTAGTTPDWTS 182
            AAW++    D  I     ++ +VP   + +L +  F   L W P       G  P   S
Sbjct: 119 VAAWRKDKPTDLAIIGAATLMLSVPSFWLGLLLLMFFGQYLGWLPV-----VGYVP--MS 171

Query: 183 WAFIKDVGYHAVLPLFCASIVQIGGFLVNMRNNMINLLAEDYITMAKGKGLSENRVVFNY 242
             F + V Y  +LP+    +V+ G      R + I +L  +Y+T A+ KG+ E++V+  +
Sbjct: 172 ENFSQGVLY-VILPIATLLLVETGVLTRMSRASTIEILRLEYVTHARAKGVPESQVLRRH 230

Query: 243 AARNALLPSVTALSMSLGMAIGGQLIIEIIFNYPGLGTVLFNAITARDYQVLQGQLLIMT 302
              NA  P++T + + LG  + G  ++E +F  PGLG ++ ++I ARDY VLQG LL   
Sbjct: 231 VLPNAFNPTLTMIGLILGHLLSGIAVLETVFTLPGLGRLMIDSIFARDYPVLQGCLLFTA 290

Query: 303 LFMLFFNLLADMLYVVLDPRL 323
              +  NL+ D+ Y + DPR+
Sbjct: 291 CIYVVINLVVDLCYPLFDPRV 311