Pairwise Alignments

Query, 328 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 327 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  160 bits (404), Expect = 5e-44
 Identities = 94/304 (30%), Positives = 161/304 (52%), Gaps = 5/304 (1%)

Query: 21  LNFIIPRAMPGDPVTMMFAHATAQVTPERIEAMKQLLGFVEGPWYVQYLTYIKSILTWEL 80
           LNFI+ + +PGD   ++ A +    T E +  ++   G ++ P   Q   Y+ ++  + L
Sbjct: 27  LNFILMQLIPGDAADVVAAES-GSATAESMAQLRTHFG-LDLPVIQQLFAYLNNLAHFSL 84

Query: 81  GTSIKFYPLSVNELLGGAFGWSLFLAGTAVIISFSIGSVLGIFAAWKRGSRYDTFITPGM 140
           G S + Y + V  L+G   G +L L  TA+  + +IG   G   A + G   D  ++   
Sbjct: 85  GISPR-YNMPVVSLIGARLGNTLLLMVTALAFALAIGIAAGTVMATRVGRWQDRTLSVLA 143

Query: 141 LVIQAVPQVVIAMLAMFTFAIGLSWFPTGYAYTAGTTPDWTSWAFIKDVGYHAVLPLFCA 200
           L++ + P   + ++A+  F++ L W PTG + + G    +T W  + DV  H VLP    
Sbjct: 144 LLLYSTPGFWLGLMAIVLFSVHLGWLPTGGSESIGA--GYTGWTHVVDVARHLVLPALAM 201

Query: 201 SIVQIGGFLVNMRNNMINLLAEDYITMAKGKGLSENRVVFNYAARNALLPSVTALSMSLG 260
           +   I  F    R  M+ +  +D++  A+ KGL    V   +  RNAL+P  T   M  G
Sbjct: 202 AGFYIAIFSRLTRAAMLEVSRQDFVRTAEAKGLHPWTVNLRHILRNALIPVTTVAGMHFG 261

Query: 261 MAIGGQLIIEIIFNYPGLGTVLFNAITARDYQVLQGQLLIMTLFMLFFNLLADMLYVVLD 320
             +GG +++E +F++PGLG + F+++  RDY VL G LL+ +L ++  N+L D+L+  LD
Sbjct: 262 TLLGGAVVVETVFSWPGLGRLAFDSVAGRDYTVLLGVLLMSSLLVIVANMLVDLLHAWLD 321

Query: 321 PRLR 324
           PR++
Sbjct: 322 PRIQ 325