Pairwise Alignments

Query, 328 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 334 a.a., Dipeptide ABC transporter, permease protein DppB (TC 3.A.1.5.2) from Variovorax sp. SCN45

 Score =  152 bits (384), Expect = 1e-41
 Identities = 108/341 (31%), Positives = 170/341 (49%), Gaps = 28/341 (8%)

Query: 3   YFLRRLSFYFAALLVAATLNFIIPRAMPGDPVTMMFAHATAQVTPERIEAMKQLLGFVEG 62
           + L R+S      +    L F + R +PGDP+  M       + P R   ++   GF + 
Sbjct: 4   FILTRVSLLVPTFIGMTLLAFFLIRLVPGDPIETMAGERG--IDPARHAELRTAYGF-DK 60

Query: 63  PWYVQYLTYIKSILTWELGTSIKFYPLSVNELLGGAFGWSLFLAGTAVIISFSIGSVLGI 122
           P  VQY  YI  +L  +LG SI      ++E L   F  ++ LA  A++ +  +G   GI
Sbjct: 61  PVIVQYGIYIGRVLHGDLGKSIITQDTVMSEFLA-LFPATVELAVCAILFALLLGLPAGI 119

Query: 123 FAAWKRGSRYDTFITPGMLVIQAVPQVVIAMLAMFTFAIGLSWFP--------------T 168
            AA +R S +D  +    L   ++P     +L +  F++ L W P              T
Sbjct: 120 LAAVRRNSIFDHGVMATSLTGYSMPIFWWGLLLILFFSVQLGWTPVSGRIAVQYYIEPET 179

Query: 169 GY----AYTAGTTPDWTSWAFIKDVGYHAVLPLFCASIVQIGGFLVNMRNNMINLLAEDY 224
           G+    +  AG T  +  W+ +    +H +LP      V +       R+ M+ +L EDY
Sbjct: 180 GFLLIDSLRAGDTGAF--WSAL----HHLILPAVVLGTVPLAVIARMTRSAMLEVLGEDY 233

Query: 225 ITMAKGKGLSENRVVFNYAARNALLPSVTALSMSLGMAIGGQLIIEIIFNYPGLGTVLFN 284
           I  A+ KGLS  RVV  +A RNAL+P VT + + +G+   G ++ E IF++PG+G  L  
Sbjct: 234 IRTARAKGLSRLRVVGLHALRNALIPVVTVIGLQVGVLFTGAILTETIFSWPGVGKWLIE 293

Query: 285 AITARDYQVLQGQLLIMTLFMLFFNLLADMLYVVLDPRLRK 325
           AI  RDY VLQG +L++   ++  NLL D+ Y V++PR+R+
Sbjct: 294 AIGRRDYPVLQGGMLLLGGIVMLVNLLVDVAYGVINPRIRR 334